Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01465 and RR42_RS01470 are separated by 56 nucleotides RR42_RS01470 and RR42_RS01475 are separated by 224 nucleotides RR42_RS01475 and RR42_RS01480 are separated by 1 nucleotides
RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086
_RS01465
RR42_RS01470: RR42_RS01470 - hypothetical protein, at 333,143 to 333,856
_RS01470
RR42_RS01475: RR42_RS01475 - hypothetical protein, at 334,081 to 334,401
_RS01475
RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668
_RS01480
Position (kb) 333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 332.181 kb on + strand, within RR42_RS01465 at 332.181 kb on + strand, within RR42_RS01465 at 332.181 kb on + strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.475 kb on + strand, within RR42_RS01465 at 332.475 kb on + strand, within RR42_RS01465 at 332.476 kb on - strand, within RR42_RS01465 at 332.477 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.803 kb on - strand, within RR42_RS01465 at 333.227 kb on + strand, within RR42_RS01470 at 333.228 kb on - strand, within RR42_RS01470 at 333.300 kb on + strand, within RR42_RS01470 at 333.301 kb on - strand, within RR42_RS01470 at 333.446 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.631 kb on - strand, within RR42_RS01470 at 333.631 kb on - strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.815 kb on + strand at 333.816 kb on - strand at 333.928 kb on - strand at 333.958 kb on + strand at 333.959 kb on - strand at 334.066 kb on + strand at 334.066 kb on + strand at 334.066 kb on + strand at 334.097 kb on + strand at 334.098 kb on - strand at 334.098 kb on - strand at 334.098 kb on - strand at 334.253 kb on + strand, within RR42_RS01475 at 334.253 kb on - strand, within RR42_RS01475 at 334.254 kb on - strand, within RR42_RS01475 at 334.254 kb on - strand, within RR42_RS01475 at 334.258 kb on + strand, within RR42_RS01475 at 334.259 kb on - strand, within RR42_RS01475 at 334.259 kb on - strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.450 kb on - strand at 334.674 kb on + strand, within RR42_RS01480
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 332,181 + RR42_RS01465 0.54 +0.8 332,181 + RR42_RS01465 0.54 +0.1 332,181 + RR42_RS01465 0.54 -1.1 332,182 - RR42_RS01465 0.54 +1.0 332,182 - RR42_RS01465 0.54 +0.9 332,182 - RR42_RS01465 0.54 +2.2 332,182 - RR42_RS01465 0.54 +1.3 332,182 - RR42_RS01465 0.54 -0.4 332,182 - RR42_RS01465 0.54 -0.5 332,475 + RR42_RS01465 0.69 -0.2 332,475 + RR42_RS01465 0.69 +1.0 332,476 - RR42_RS01465 0.69 +0.2 332,477 + RR42_RS01465 0.69 +0.3 332,796 + RR42_RS01465 0.85 +0.3 332,796 + RR42_RS01465 0.85 -1.5 332,796 + RR42_RS01465 0.85 -0.8 332,796 + RR42_RS01465 0.85 +0.9 332,797 - RR42_RS01465 0.85 -0.6 332,797 - RR42_RS01465 0.85 -1.0 332,797 - RR42_RS01465 0.85 +0.2 332,803 - RR42_RS01465 0.86 +1.7 333,227 + RR42_RS01470 0.12 -1.8 333,228 - RR42_RS01470 0.12 +1.2 333,300 + RR42_RS01470 0.22 -0.5 333,301 - RR42_RS01470 0.22 +1.0 333,446 + RR42_RS01470 0.42 -0.7 333,630 + RR42_RS01470 0.68 -0.1 333,630 + RR42_RS01470 0.68 +2.0 333,630 + RR42_RS01470 0.68 -0.6 333,631 - RR42_RS01470 0.68 -0.6 333,631 - RR42_RS01470 0.68 +0.7 333,704 + RR42_RS01470 0.79 -1.4 333,704 + RR42_RS01470 0.79 -1.6 333,704 + RR42_RS01470 0.79 -0.8 333,704 + RR42_RS01470 0.79 +0.6 333,704 + RR42_RS01470 0.79 -1.0 333,705 - RR42_RS01470 0.79 -3.1 333,705 - RR42_RS01470 0.79 -0.1 333,705 - RR42_RS01470 0.79 -0.4 333,815 + +0.0 333,816 - -2.1 333,928 - +1.3 333,958 + +0.2 333,959 - -0.4 334,066 + -0.5 334,066 + -2.4 334,066 + +0.5 334,097 + +0.3 334,098 - +0.7 334,098 - +0.4 334,098 - -2.7 334,253 + RR42_RS01475 0.54 -0.5 334,253 - RR42_RS01475 0.54 -1.7 334,254 - RR42_RS01475 0.54 -0.3 334,254 - RR42_RS01475 0.54 -0.6 334,258 + RR42_RS01475 0.55 +0.6 334,259 - RR42_RS01475 0.55 -0.4 334,259 - RR42_RS01475 0.55 -1.4 334,291 + RR42_RS01475 0.65 +0.2 334,291 + RR42_RS01475 0.65 +1.0 334,291 + RR42_RS01475 0.65 +0.2 334,291 + RR42_RS01475 0.65 +0.8 334,291 + RR42_RS01475 0.65 -0.3 334,291 + RR42_RS01475 0.65 +1.2 334,292 - RR42_RS01475 0.66 +0.3 334,292 - RR42_RS01475 0.66 +0.3 334,292 - RR42_RS01475 0.66 -0.4 334,292 - RR42_RS01475 0.66 +0.1 334,292 - RR42_RS01475 0.66 +0.9 334,450 - -1.6 334,674 + RR42_RS01480 0.21 -1.8
Or see this region's nucleotide sequence