Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01405

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01395 and RR42_RS01400 are separated by 22 nucleotidesRR42_RS01400 and RR42_RS01405 are separated by 153 nucleotidesRR42_RS01405 and RR42_RS01410 are separated by 104 nucleotides RR42_RS01395: RR42_RS01395 - twitching motility protein PilT, at 314,708 to 315,475 _RS01395 RR42_RS01400: RR42_RS01400 - 5-formyltetrahydrofolate cyclo-ligase, at 315,498 to 316,049 _RS01400 RR42_RS01405: RR42_RS01405 - lytic transglycosylase, at 316,203 to 318,155 _RS01405 RR42_RS01410: RR42_RS01410 - NAD-dependent dehydratase, at 318,260 to 319,285 _RS01410 Position (kb) 316 317 318 319Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 315.430 kb on + strandat 315.430 kb on + strandat 315.430 kb on + strandat 315.430 kb on + strandat 315.431 kb on - strandat 315.431 kb on - strandat 315.473 kb on + strandat 315.473 kb on + strandat 315.473 kb on + strandat 315.473 kb on + strandat 315.474 kb on - strandat 315.644 kb on - strand, within RR42_RS01400at 315.674 kb on + strand, within RR42_RS01400at 315.675 kb on - strand, within RR42_RS01400at 315.708 kb on + strand, within RR42_RS01400at 315.709 kb on - strand, within RR42_RS01400at 315.754 kb on + strand, within RR42_RS01400at 315.755 kb on - strand, within RR42_RS01400at 315.913 kb on + strand, within RR42_RS01400at 315.914 kb on - strand, within RR42_RS01400at 315.914 kb on - strand, within RR42_RS01400at 316.119 kb on + strandat 316.120 kb on - strandat 316.216 kb on + strandat 316.216 kb on + strandat 316.217 kb on - strandat 316.219 kb on - strandat 316.219 kb on - strandat 316.219 kb on - strandat 316.282 kb on + strandat 316.283 kb on - strandat 316.431 kb on + strand, within RR42_RS01405at 316.446 kb on + strand, within RR42_RS01405at 316.447 kb on - strand, within RR42_RS01405at 316.447 kb on - strand, within RR42_RS01405at 316.447 kb on - strand, within RR42_RS01405at 316.447 kb on - strand, within RR42_RS01405at 316.455 kb on + strand, within RR42_RS01405at 316.455 kb on + strand, within RR42_RS01405at 316.545 kb on + strand, within RR42_RS01405at 316.546 kb on - strand, within RR42_RS01405at 316.678 kb on - strand, within RR42_RS01405at 316.752 kb on + strand, within RR42_RS01405at 316.756 kb on - strand, within RR42_RS01405at 316.785 kb on + strand, within RR42_RS01405at 316.857 kb on + strand, within RR42_RS01405at 316.857 kb on + strand, within RR42_RS01405at 316.857 kb on + strand, within RR42_RS01405at 316.858 kb on - strand, within RR42_RS01405at 316.858 kb on - strand, within RR42_RS01405at 316.858 kb on - strand, within RR42_RS01405at 316.858 kb on - strand, within RR42_RS01405at 316.858 kb on - strand, within RR42_RS01405at 316.858 kb on - strand, within RR42_RS01405at 316.972 kb on - strand, within RR42_RS01405at 317.077 kb on - strand, within RR42_RS01405at 317.080 kb on - strand, within RR42_RS01405at 317.238 kb on + strand, within RR42_RS01405at 317.238 kb on + strand, within RR42_RS01405at 317.238 kb on + strand, within RR42_RS01405at 317.239 kb on - strand, within RR42_RS01405at 317.239 kb on - strand, within RR42_RS01405at 317.239 kb on - strand, within RR42_RS01405at 317.245 kb on - strand, within RR42_RS01405at 317.325 kb on + strand, within RR42_RS01405at 317.325 kb on + strand, within RR42_RS01405at 317.325 kb on + strand, within RR42_RS01405at 317.449 kb on - strand, within RR42_RS01405at 317.449 kb on - strand, within RR42_RS01405at 317.538 kb on + strand, within RR42_RS01405at 317.688 kb on + strand, within RR42_RS01405at 317.689 kb on - strand, within RR42_RS01405at 317.850 kb on - strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.868 kb on + strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.869 kb on - strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.870 kb on + strand, within RR42_RS01405at 317.871 kb on - strand, within RR42_RS01405at 317.871 kb on - strand, within RR42_RS01405at 317.871 kb on - strand, within RR42_RS01405at 317.876 kb on + strand, within RR42_RS01405at 317.876 kb on + strand, within RR42_RS01405at 317.877 kb on - strand, within RR42_RS01405at 317.926 kb on - strand, within RR42_RS01405at 318.030 kb on + strandat 318.030 kb on + strandat 318.031 kb on - strandat 318.031 kb on - strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.060 kb on + strandat 318.063 kb on + strandat 318.063 kb on + strandat 318.063 kb on + strandat 318.063 kb on + strandat 318.064 kb on - strandat 318.064 kb on - strandat 318.064 kb on - strandat 318.064 kb on - strandat 318.064 kb on - strandat 318.162 kb on - strandat 318.279 kb on + strandat 318.714 kb on - strand, within RR42_RS01410at 318.714 kb on - strand, within RR42_RS01410at 318.893 kb on + strand, within RR42_RS01410at 318.893 kb on + strand, within RR42_RS01410at 318.893 kb on + strand, within RR42_RS01410at 318.894 kb on - strand, within RR42_RS01410at 318.894 kb on - strand, within RR42_RS01410at 318.959 kb on + strand, within RR42_RS01410at 318.983 kb on + strand, within RR42_RS01410at 318.984 kb on - strand, within RR42_RS01410at 318.984 kb on - strand, within RR42_RS01410at 318.985 kb on + strand, within RR42_RS01410at 318.985 kb on + strand, within RR42_RS01410at 318.985 kb on + strand, within RR42_RS01410at 318.985 kb on + strand, within RR42_RS01410at 318.986 kb on - strand, within RR42_RS01410at 318.986 kb on - strand, within RR42_RS01410at 318.986 kb on - strand, within RR42_RS01410

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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315,430 + -0.8
315,430 + -0.0
315,430 + -0.9
315,430 + -0.5
315,431 - +1.9
315,431 - -2.1
315,473 + +0.2
315,473 + +1.0
315,473 + -1.4
315,473 + -0.5
315,474 - +1.8
315,644 - RR42_RS01400 0.26 +1.9
315,674 + RR42_RS01400 0.32 -1.4
315,675 - RR42_RS01400 0.32 -0.5
315,708 + RR42_RS01400 0.38 +0.1
315,709 - RR42_RS01400 0.38 -0.7
315,754 + RR42_RS01400 0.46 -1.4
315,755 - RR42_RS01400 0.47 -2.1
315,913 + RR42_RS01400 0.75 -0.1
315,914 - RR42_RS01400 0.75 +0.3
315,914 - RR42_RS01400 0.75 -0.1
316,119 + -1.2
316,120 - +0.1
316,216 + -2.0
316,216 + +1.3
316,217 - -0.1
316,219 - -1.2
316,219 - +0.9
316,219 - +0.3
316,282 + +0.7
316,283 - +0.7
316,431 + RR42_RS01405 0.12 -3.6
316,446 + RR42_RS01405 0.12 -0.6
316,447 - RR42_RS01405 0.12 +0.0
316,447 - RR42_RS01405 0.12 -2.6
316,447 - RR42_RS01405 0.12 -4.2
316,447 - RR42_RS01405 0.12 -0.6
316,455 + RR42_RS01405 0.13 +0.2
316,455 + RR42_RS01405 0.13 +0.9
316,545 + RR42_RS01405 0.18 +1.9
316,546 - RR42_RS01405 0.18 -0.6
316,678 - RR42_RS01405 0.24 -1.1
316,752 + RR42_RS01405 0.28 -1.5
316,756 - RR42_RS01405 0.28 -3.0
316,785 + RR42_RS01405 0.30 -0.3
316,857 + RR42_RS01405 0.33 +0.2
316,857 + RR42_RS01405 0.33 +0.3
316,857 + RR42_RS01405 0.33 -2.3
316,858 - RR42_RS01405 0.34 -0.8
316,858 - RR42_RS01405 0.34 -2.9
316,858 - RR42_RS01405 0.34 -0.7
316,858 - RR42_RS01405 0.34 +0.4
316,858 - RR42_RS01405 0.34 -0.9
316,858 - RR42_RS01405 0.34 -1.6
316,972 - RR42_RS01405 0.39 +0.8
317,077 - RR42_RS01405 0.45 +0.2
317,080 - RR42_RS01405 0.45 -1.2
317,238 + RR42_RS01405 0.53 -0.6
317,238 + RR42_RS01405 0.53 -2.5
317,238 + RR42_RS01405 0.53 -1.0
317,239 - RR42_RS01405 0.53 +0.2
317,239 - RR42_RS01405 0.53 -3.5
317,239 - RR42_RS01405 0.53 +0.2
317,245 - RR42_RS01405 0.53 -0.9
317,325 + RR42_RS01405 0.57 -0.3
317,325 + RR42_RS01405 0.57 -1.0
317,325 + RR42_RS01405 0.57 -4.0
317,449 - RR42_RS01405 0.64 +0.2
317,449 - RR42_RS01405 0.64 -0.5
317,538 + RR42_RS01405 0.68 -0.6
317,688 + RR42_RS01405 0.76 -3.7
317,689 - RR42_RS01405 0.76 -0.4
317,850 - RR42_RS01405 0.84 +0.1
317,868 + RR42_RS01405 0.85 -1.3
317,868 + RR42_RS01405 0.85 -0.3
317,868 + RR42_RS01405 0.85 -1.2
317,868 + RR42_RS01405 0.85 -2.4
317,868 + RR42_RS01405 0.85 +1.0
317,868 + RR42_RS01405 0.85 -3.5
317,869 - RR42_RS01405 0.85 -2.1
317,869 - RR42_RS01405 0.85 +0.0
317,869 - RR42_RS01405 0.85 -1.7
317,869 - RR42_RS01405 0.85 -1.1
317,869 - RR42_RS01405 0.85 -0.8
317,869 - RR42_RS01405 0.85 +0.2
317,869 - RR42_RS01405 0.85 -0.1
317,870 + RR42_RS01405 0.85 -0.2
317,870 + RR42_RS01405 0.85 -0.7
317,870 + RR42_RS01405 0.85 -0.6
317,870 + RR42_RS01405 0.85 -0.4
317,870 + RR42_RS01405 0.85 +0.3
317,870 + RR42_RS01405 0.85 -0.6
317,870 + RR42_RS01405 0.85 -0.5
317,870 + RR42_RS01405 0.85 -0.7
317,871 - RR42_RS01405 0.85 -1.6
317,871 - RR42_RS01405 0.85 -3.0
317,871 - RR42_RS01405 0.85 -3.0
317,876 + RR42_RS01405 0.86 +0.4
317,876 + RR42_RS01405 0.86 +0.8
317,877 - RR42_RS01405 0.86 -2.0
317,926 - RR42_RS01405 0.88 -0.8
318,030 + -0.6
318,030 + -4.0
318,031 - -1.2
318,031 - -0.9
318,060 + -0.7
318,060 + -0.9
318,060 + -1.4
318,060 + -2.5
318,060 + -3.4
318,060 + -4.2
318,060 + -2.1
318,063 + -3.9
318,063 + +1.5
318,063 + +0.2
318,063 + -0.4
318,064 - -0.8
318,064 - +0.0
318,064 - -0.2
318,064 - -0.7
318,064 - -0.5
318,162 - -3.3
318,279 + -0.2
318,714 - RR42_RS01410 0.44 +0.6
318,714 - RR42_RS01410 0.44 -0.4
318,893 + RR42_RS01410 0.62 -0.2
318,893 + RR42_RS01410 0.62 -0.6
318,893 + RR42_RS01410 0.62 +0.1
318,894 - RR42_RS01410 0.62 +0.7
318,894 - RR42_RS01410 0.62 +0.6
318,959 + RR42_RS01410 0.68 -0.5
318,983 + RR42_RS01410 0.70 +0.1
318,984 - RR42_RS01410 0.71 -1.8
318,984 - RR42_RS01410 0.71 +1.5
318,985 + RR42_RS01410 0.71 +0.8
318,985 + RR42_RS01410 0.71 +1.7
318,985 + RR42_RS01410 0.71 +0.9
318,985 + RR42_RS01410 0.71 -1.1
318,986 - RR42_RS01410 0.71 +0.3
318,986 - RR42_RS01410 0.71 +1.0
318,986 - RR42_RS01410 0.71 +1.4

Or see this region's nucleotide sequence