Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01320 and RR42_RS01325 are separated by 0 nucleotides RR42_RS01325 and RR42_RS01330 are separated by 20 nucleotides RR42_RS01330 and RR42_RS01335 are separated by 222 nucleotides
RR42_RS01320: RR42_RS01320 - ATPase AAA, at 299,929 to 300,705
_RS01320
RR42_RS01325: RR42_RS01325 - hypothetical protein, at 300,706 to 301,023
_RS01325
RR42_RS01330: RR42_RS01330 - Fis family transcriptional regulator, at 301,044 to 302,765
_RS01330
RR42_RS01335: RR42_RS01335 - methylmalonyl-CoA carboxyltransferase, at 302,988 to 304,535
_RS01335
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 300.124 kb on + strand, within RR42_RS01320 at 300.124 kb on + strand, within RR42_RS01320 at 300.125 kb on - strand, within RR42_RS01320 at 300.193 kb on + strand, within RR42_RS01320 at 300.193 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.560 kb on - strand, within RR42_RS01320 at 300.596 kb on - strand, within RR42_RS01320 at 300.859 kb on + strand, within RR42_RS01325 at 300.860 kb on - strand, within RR42_RS01325 at 300.890 kb on - strand, within RR42_RS01325 at 300.890 kb on - strand, within RR42_RS01325 at 300.916 kb on + strand, within RR42_RS01325 at 300.916 kb on + strand, within RR42_RS01325 at 300.917 kb on - strand, within RR42_RS01325 at 300.986 kb on - strand, within RR42_RS01325 at 301.075 kb on + strand at 301.075 kb on + strand at 301.075 kb on + strand at 301.576 kb on + strand, within RR42_RS01330 at 301.577 kb on - strand, within RR42_RS01330 at 301.691 kb on + strand, within RR42_RS01330 at 301.691 kb on + strand, within RR42_RS01330 at 301.692 kb on - strand, within RR42_RS01330 at 301.692 kb on - strand, within RR42_RS01330 at 302.304 kb on + strand, within RR42_RS01330 at 302.740 kb on - strand at 302.740 kb on - strand at 302.767 kb on - strand at 302.873 kb on + strand at 302.873 kb on + strand at 302.874 kb on - strand at 302.938 kb on + strand at 302.939 kb on - strand at 302.951 kb on - strand at 302.963 kb on + strand at 303.172 kb on - strand, within RR42_RS01335 at 303.420 kb on + strand, within RR42_RS01335 at 303.547 kb on - strand, within RR42_RS01335 at 303.619 kb on + strand, within RR42_RS01335 at 303.620 kb on - strand, within RR42_RS01335 at 303.656 kb on + strand, within RR42_RS01335 at 303.733 kb on - strand, within RR42_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 300,124 + RR42_RS01320 0.25 -2.3 300,124 + RR42_RS01320 0.25 -2.1 300,125 - RR42_RS01320 0.25 +1.3 300,193 + RR42_RS01320 0.34 +0.2 300,193 + RR42_RS01320 0.34 +1.4 300,559 + RR42_RS01320 0.81 -3.4 300,559 + RR42_RS01320 0.81 +1.9 300,559 + RR42_RS01320 0.81 -1.6 300,559 + RR42_RS01320 0.81 +0.4 300,560 - RR42_RS01320 0.81 -1.1 300,596 - RR42_RS01320 0.86 +2.2 300,859 + RR42_RS01325 0.48 -1.7 300,860 - RR42_RS01325 0.48 +0.8 300,890 - RR42_RS01325 0.58 +0.4 300,890 - RR42_RS01325 0.58 +1.4 300,916 + RR42_RS01325 0.66 +0.6 300,916 + RR42_RS01325 0.66 +0.0 300,917 - RR42_RS01325 0.66 +0.4 300,986 - RR42_RS01325 0.88 +2.1 301,075 + -0.3 301,075 + -2.6 301,075 + -0.6 301,576 + RR42_RS01330 0.31 +0.2 301,577 - RR42_RS01330 0.31 -0.0 301,691 + RR42_RS01330 0.38 +0.2 301,691 + RR42_RS01330 0.38 -1.3 301,692 - RR42_RS01330 0.38 +0.5 301,692 - RR42_RS01330 0.38 +0.1 302,304 + RR42_RS01330 0.73 +1.2 302,740 - +1.1 302,740 - -0.0 302,767 - +1.7 302,873 + -0.8 302,873 + -0.2 302,874 - -2.7 302,938 + -0.7 302,939 - -0.2 302,951 - +0.3 302,963 + +0.9 303,172 - RR42_RS01335 0.12 -0.8 303,420 + RR42_RS01335 0.28 +0.8 303,547 - RR42_RS01335 0.36 -0.8 303,619 + RR42_RS01335 0.41 -0.2 303,620 - RR42_RS01335 0.41 +0.5 303,656 + RR42_RS01335 0.43 -1.1 303,733 - RR42_RS01335 0.48 -0.3
Or see this region's nucleotide sequence