Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01280

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01275 and RR42_RS01280 are separated by 293 nucleotidesRR42_RS01280 and RR42_RS01285 are separated by 116 nucleotides RR42_RS01275: RR42_RS01275 - aldehyde dehydrogenase, at 288,247 to 289,659 _RS01275 RR42_RS01280: RR42_RS01280 - GMC family oxidoreductase, at 289,953 to 291,632 _RS01280 RR42_RS01285: RR42_RS01285 - acyl-CoA dehydrogenase, at 291,749 to 293,410 _RS01285 Position (kb) 289 290 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 289.224 kb on - strand, within RR42_RS01275at 289.292 kb on + strand, within RR42_RS01275at 289.292 kb on + strand, within RR42_RS01275at 289.293 kb on - strand, within RR42_RS01275at 289.293 kb on - strand, within RR42_RS01275at 289.293 kb on - strand, within RR42_RS01275at 289.301 kb on + strand, within RR42_RS01275at 289.302 kb on - strand, within RR42_RS01275at 289.302 kb on - strand, within RR42_RS01275at 289.723 kb on + strandat 289.723 kb on + strandat 289.723 kb on + strandat 289.723 kb on + strandat 289.724 kb on - strandat 289.785 kb on + strandat 289.787 kb on + strandat 289.788 kb on - strandat 289.788 kb on - strandat 289.831 kb on + strandat 289.831 kb on + strandat 289.832 kb on - strandat 289.832 kb on - strandat 289.832 kb on - strandat 289.832 kb on - strandat 289.832 kb on - strandat 289.971 kb on + strandat 289.972 kb on - strandat 290.136 kb on - strand, within RR42_RS01280at 290.136 kb on - strand, within RR42_RS01280at 290.139 kb on + strand, within RR42_RS01280at 290.139 kb on + strand, within RR42_RS01280at 290.139 kb on + strand, within RR42_RS01280at 290.140 kb on - strand, within RR42_RS01280at 290.140 kb on - strand, within RR42_RS01280at 290.140 kb on - strand, within RR42_RS01280at 290.241 kb on + strand, within RR42_RS01280at 290.241 kb on + strand, within RR42_RS01280at 290.241 kb on + strand, within RR42_RS01280at 290.265 kb on + strand, within RR42_RS01280at 290.323 kb on - strand, within RR42_RS01280at 290.819 kb on - strand, within RR42_RS01280at 290.823 kb on - strand, within RR42_RS01280at 290.959 kb on + strand, within RR42_RS01280at 291.095 kb on + strand, within RR42_RS01280at 291.095 kb on + strand, within RR42_RS01280at 291.096 kb on - strand, within RR42_RS01280at 291.096 kb on - strand, within RR42_RS01280at 291.124 kb on - strand, within RR42_RS01280at 291.169 kb on + strand, within RR42_RS01280at 291.170 kb on - strand, within RR42_RS01280at 291.324 kb on + strand, within RR42_RS01280at 291.324 kb on + strand, within RR42_RS01280at 291.325 kb on - strand, within RR42_RS01280at 291.395 kb on + strand, within RR42_RS01280at 291.402 kb on + strand, within RR42_RS01280at 291.402 kb on + strand, within RR42_RS01280at 291.403 kb on - strand, within RR42_RS01280at 291.403 kb on - strand, within RR42_RS01280at 291.403 kb on - strand, within RR42_RS01280at 291.403 kb on - strand, within RR42_RS01280at 291.403 kb on - strand, within RR42_RS01280at 291.403 kb on - strand, within RR42_RS01280at 291.403 kb on - strand, within RR42_RS01280at 292.147 kb on - strand, within RR42_RS01285at 292.176 kb on + strand, within RR42_RS01285at 292.177 kb on - strand, within RR42_RS01285at 292.503 kb on + strand, within RR42_RS01285at 292.503 kb on + strand, within RR42_RS01285at 292.504 kb on - strand, within RR42_RS01285at 292.504 kb on - strand, within RR42_RS01285

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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289,224 - RR42_RS01275 0.69 +0.4
289,292 + RR42_RS01275 0.74 -0.3
289,292 + RR42_RS01275 0.74 -2.9
289,293 - RR42_RS01275 0.74 -0.2
289,293 - RR42_RS01275 0.74 -0.3
289,293 - RR42_RS01275 0.74 -1.4
289,301 + RR42_RS01275 0.75 +3.0
289,302 - RR42_RS01275 0.75 +0.3
289,302 - RR42_RS01275 0.75 -3.1
289,723 + -1.0
289,723 + -0.2
289,723 + +0.6
289,723 + +0.0
289,724 - +1.1
289,785 + -0.3
289,787 + -0.0
289,788 - +0.2
289,788 - +3.2
289,831 + +0.1
289,831 + +0.8
289,832 - +0.5
289,832 - +0.6
289,832 - +0.8
289,832 - +0.8
289,832 - +1.6
289,971 + +0.4
289,972 - +1.7
290,136 - RR42_RS01280 0.11 -1.7
290,136 - RR42_RS01280 0.11 -1.6
290,139 + RR42_RS01280 0.11 -1.2
290,139 + RR42_RS01280 0.11 -1.8
290,139 + RR42_RS01280 0.11 -0.6
290,140 - RR42_RS01280 0.11 +0.4
290,140 - RR42_RS01280 0.11 +0.0
290,140 - RR42_RS01280 0.11 -0.2
290,241 + RR42_RS01280 0.17 +0.2
290,241 + RR42_RS01280 0.17 -0.5
290,241 + RR42_RS01280 0.17 +0.0
290,265 + RR42_RS01280 0.19 -2.1
290,323 - RR42_RS01280 0.22 +1.2
290,819 - RR42_RS01280 0.52 +0.3
290,823 - RR42_RS01280 0.52 -2.6
290,959 + RR42_RS01280 0.60 -1.7
291,095 + RR42_RS01280 0.68 +0.4
291,095 + RR42_RS01280 0.68 -1.5
291,096 - RR42_RS01280 0.68 -1.6
291,096 - RR42_RS01280 0.68 -0.3
291,124 - RR42_RS01280 0.70 +0.5
291,169 + RR42_RS01280 0.72 -1.1
291,170 - RR42_RS01280 0.72 +1.0
291,324 + RR42_RS01280 0.82 +0.6
291,324 + RR42_RS01280 0.82 -0.1
291,325 - RR42_RS01280 0.82 -1.1
291,395 + RR42_RS01280 0.86 -1.4
291,402 + RR42_RS01280 0.86 +0.3
291,402 + RR42_RS01280 0.86 +1.0
291,403 - RR42_RS01280 0.86 +0.8
291,403 - RR42_RS01280 0.86 +0.5
291,403 - RR42_RS01280 0.86 +0.5
291,403 - RR42_RS01280 0.86 +0.2
291,403 - RR42_RS01280 0.86 -2.7
291,403 - RR42_RS01280 0.86 -0.3
291,403 - RR42_RS01280 0.86 +0.5
292,147 - RR42_RS01285 0.24 -0.8
292,176 + RR42_RS01285 0.26 +1.2
292,177 - RR42_RS01285 0.26 -3.5
292,503 + RR42_RS01285 0.45 -1.0
292,503 + RR42_RS01285 0.45 -0.7
292,504 - RR42_RS01285 0.45 +0.2
292,504 - RR42_RS01285 0.45 -0.8

Or see this region's nucleotide sequence