Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01210

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01200 and RR42_RS01205 are separated by 29 nucleotidesRR42_RS01205 and RR42_RS01210 are separated by 145 nucleotidesRR42_RS01210 and RR42_RS01215 are separated by 78 nucleotidesRR42_RS01215 and RR42_RS01220 are separated by 30 nucleotides RR42_RS01200: RR42_RS01200 - hypothetical protein, at 274,336 to 275,145 _RS01200 RR42_RS01205: RR42_RS01205 - transposase, at 275,175 to 275,579 _RS01205 RR42_RS01210: RR42_RS01210 - n-acetyl-gamma-glutamyl-phosphate reductase, at 275,725 to 276,672 _RS01210 RR42_RS01215: RR42_RS01215 - hypothetical protein, at 276,751 to 276,939 _RS01215 RR42_RS01220: RR42_RS01220 - exodeoxyribonuclease III, at 276,970 to 277,746 _RS01220 Position (kb) 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2at 275.617 kb on + strandat 275.617 kb on + strandat 275.703 kb on - strandat 275.703 kb on - strandat 275.710 kb on - strandat 275.718 kb on - strandat 275.966 kb on + strand, within RR42_RS01210at 275.966 kb on + strand, within RR42_RS01210at 275.967 kb on - strand, within RR42_RS01210at 276.230 kb on + strand, within RR42_RS01210at 276.399 kb on - strand, within RR42_RS01210at 276.450 kb on + strand, within RR42_RS01210at 276.451 kb on - strand, within RR42_RS01210at 276.612 kb on - strandat 276.652 kb on + strandat 276.653 kb on - strandat 276.653 kb on - strandat 276.653 kb on - strandat 276.653 kb on - strandat 276.692 kb on - strandat 276.692 kb on - strandat 276.733 kb on + strandat 276.733 kb on + strandat 276.733 kb on + strandat 276.733 kb on + strandat 276.734 kb on - strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.738 kb on - strandat 276.738 kb on - strandat 276.738 kb on - strandat 276.781 kb on - strand, within RR42_RS01215at 276.784 kb on + strand, within RR42_RS01215at 276.784 kb on + strand, within RR42_RS01215at 276.785 kb on - strand, within RR42_RS01215at 276.785 kb on - strand, within RR42_RS01215at 276.785 kb on - strand, within RR42_RS01215at 276.938 kb on - strandat 276.965 kb on - strandat 276.965 kb on - strandat 276.965 kb on - strandat 276.971 kb on + strandat 276.971 kb on + strandat 276.972 kb on - strandat 276.972 kb on - strandat 276.972 kb on - strandat 277.031 kb on + strandat 277.142 kb on + strand, within RR42_RS01220at 277.142 kb on + strand, within RR42_RS01220at 277.142 kb on + strand, within RR42_RS01220at 277.142 kb on + strand, within RR42_RS01220at 277.142 kb on + strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.421 kb on + strand, within RR42_RS01220at 277.421 kb on + strand, within RR42_RS01220at 277.421 kb on + strand, within RR42_RS01220at 277.422 kb on - strand, within RR42_RS01220at 277.448 kb on + strand, within RR42_RS01220at 277.463 kb on + strand, within RR42_RS01220at 277.548 kb on + strand, within RR42_RS01220at 277.548 kb on + strand, within RR42_RS01220at 277.549 kb on - strand, within RR42_RS01220at 277.568 kb on + strand, within RR42_RS01220at 277.577 kb on + strand, within RR42_RS01220at 277.577 kb on + strand, within RR42_RS01220

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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275,617 + -1.1
275,617 + -0.4
275,703 - +0.0
275,703 - +0.4
275,710 - -0.5
275,718 - +2.0
275,966 + RR42_RS01210 0.25 +0.5
275,966 + RR42_RS01210 0.25 +1.2
275,967 - RR42_RS01210 0.26 -1.6
276,230 + RR42_RS01210 0.53 -0.3
276,399 - RR42_RS01210 0.71 +0.4
276,450 + RR42_RS01210 0.76 +0.5
276,451 - RR42_RS01210 0.77 -1.2
276,612 - -0.3
276,652 + +1.5
276,653 - -0.3
276,653 - +2.2
276,653 - +0.3
276,653 - +0.2
276,692 - -0.4
276,692 - +0.4
276,733 + +0.6
276,733 + -0.0
276,733 + -0.8
276,733 + +1.2
276,734 - +1.2
276,737 + -0.5
276,737 + -0.4
276,737 + -0.1
276,737 + +1.8
276,737 + -0.5
276,737 + -1.1
276,737 + +0.3
276,738 - -1.0
276,738 - -1.8
276,738 - -1.4
276,781 - RR42_RS01215 0.16 +0.3
276,784 + RR42_RS01215 0.17 -0.3
276,784 + RR42_RS01215 0.17 +0.4
276,785 - RR42_RS01215 0.18 -2.0
276,785 - RR42_RS01215 0.18 +0.0
276,785 - RR42_RS01215 0.18 +0.1
276,938 - +0.1
276,965 - -0.8
276,965 - +0.7
276,965 - -1.4
276,971 + -1.7
276,971 + +1.2
276,972 - -1.4
276,972 - +1.8
276,972 - +0.3
277,031 + -0.9
277,142 + RR42_RS01220 0.22 -1.8
277,142 + RR42_RS01220 0.22 -2.5
277,142 + RR42_RS01220 0.22 +0.5
277,142 + RR42_RS01220 0.22 -1.6
277,142 + RR42_RS01220 0.22 -2.6
277,143 - RR42_RS01220 0.22 -0.4
277,143 - RR42_RS01220 0.22 -2.5
277,143 - RR42_RS01220 0.22 -0.4
277,143 - RR42_RS01220 0.22 +0.8
277,143 - RR42_RS01220 0.22 -1.3
277,421 + RR42_RS01220 0.58 -1.1
277,421 + RR42_RS01220 0.58 -1.1
277,421 + RR42_RS01220 0.58 +2.2
277,422 - RR42_RS01220 0.58 -2.4
277,448 + RR42_RS01220 0.62 -2.0
277,463 + RR42_RS01220 0.63 -0.5
277,548 + RR42_RS01220 0.74 -0.8
277,548 + RR42_RS01220 0.74 -0.9
277,549 - RR42_RS01220 0.75 -2.5
277,568 + RR42_RS01220 0.77 -0.2
277,577 + RR42_RS01220 0.78 -0.4
277,577 + RR42_RS01220 0.78 -0.4

Or see this region's nucleotide sequence