Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00975

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00965 and RR42_RS00970 are separated by 12 nucleotidesRR42_RS00970 and RR42_RS00975 are separated by 22 nucleotidesRR42_RS00975 and RR42_RS00980 are separated by 72 nucleotidesRR42_RS00980 and RR42_RS00985 are separated by 58 nucleotides RR42_RS00965: RR42_RS00965 - Fe-S oxidoreductase, at 229,228 to 229,497 _RS00965 RR42_RS00970: RR42_RS00970 - DSBA oxidoreductase, at 229,510 to 230,199 _RS00970 RR42_RS00975: RR42_RS00975 - MBL fold metallo-hydrolase, at 230,222 to 231,154 _RS00975 RR42_RS00980: RR42_RS00980 - hypothetical protein, at 231,227 to 231,823 _RS00980 RR42_RS00985: RR42_RS00985 - acetyltransferase, at 231,882 to 232,496 _RS00985 Position (kb) 230 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 229.345 kb on + strand, within RR42_RS00965at 229.495 kb on + strandat 229.495 kb on + strandat 229.495 kb on + strandat 229.495 kb on + strandat 229.496 kb on - strandat 229.496 kb on - strandat 229.496 kb on - strandat 229.496 kb on - strandat 229.496 kb on - strandat 229.496 kb on - strandat 229.531 kb on + strandat 229.532 kb on - strandat 229.558 kb on + strandat 229.559 kb on - strandat 229.612 kb on + strand, within RR42_RS00970at 229.613 kb on - strand, within RR42_RS00970at 229.613 kb on - strand, within RR42_RS00970at 229.920 kb on - strand, within RR42_RS00970at 230.006 kb on + strand, within RR42_RS00970at 230.006 kb on + strand, within RR42_RS00970at 230.007 kb on - strand, within RR42_RS00970at 230.011 kb on - strand, within RR42_RS00970at 230.011 kb on - strand, within RR42_RS00970at 230.011 kb on - strand, within RR42_RS00970at 230.213 kb on + strandat 230.213 kb on + strandat 230.213 kb on + strandat 230.214 kb on - strandat 230.234 kb on + strandat 230.234 kb on + strandat 230.234 kb on + strandat 230.234 kb on + strandat 230.234 kb on + strandat 230.235 kb on - strandat 230.235 kb on - strandat 230.235 kb on - strandat 230.235 kb on - strandat 230.345 kb on + strand, within RR42_RS00975at 230.547 kb on - strand, within RR42_RS00975at 230.547 kb on - strand, within RR42_RS00975at 230.900 kb on + strand, within RR42_RS00975at 230.900 kb on + strand, within RR42_RS00975at 230.901 kb on - strand, within RR42_RS00975at 231.141 kb on - strandat 231.141 kb on - strandat 231.392 kb on + strand, within RR42_RS00980at 231.392 kb on + strand, within RR42_RS00980at 231.392 kb on + strand, within RR42_RS00980at 231.392 kb on + strand, within RR42_RS00980at 231.393 kb on - strand, within RR42_RS00980at 231.393 kb on - strand, within RR42_RS00980at 231.393 kb on - strand, within RR42_RS00980at 231.393 kb on - strand, within RR42_RS00980at 231.470 kb on + strand, within RR42_RS00980at 231.979 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.011 kb on + strand, within RR42_RS00985at 232.013 kb on + strand, within RR42_RS00985at 232.014 kb on - strand, within RR42_RS00985at 232.014 kb on - strand, within RR42_RS00985at 232.077 kb on + strand, within RR42_RS00985at 232.078 kb on - strand, within RR42_RS00985at 232.078 kb on - strand, within RR42_RS00985at 232.091 kb on - strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.116 kb on + strand, within RR42_RS00985at 232.117 kb on - strand, within RR42_RS00985at 232.152 kb on + strand, within RR42_RS00985at 232.153 kb on - strand, within RR42_RS00985

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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229,345 + RR42_RS00965 0.43 -1.4
229,495 + -2.0
229,495 + -0.2
229,495 + +1.8
229,495 + -0.4
229,496 - -0.8
229,496 - +0.0
229,496 - +0.2
229,496 - -3.2
229,496 - -1.6
229,496 - +0.7
229,531 + -0.5
229,532 - +2.9
229,558 + +0.5
229,559 - +0.9
229,612 + RR42_RS00970 0.15 +1.5
229,613 - RR42_RS00970 0.15 +0.7
229,613 - RR42_RS00970 0.15 -0.7
229,920 - RR42_RS00970 0.59 -0.7
230,006 + RR42_RS00970 0.72 -2.3
230,006 + RR42_RS00970 0.72 -0.4
230,007 - RR42_RS00970 0.72 +0.6
230,011 - RR42_RS00970 0.73 -0.0
230,011 - RR42_RS00970 0.73 +0.4
230,011 - RR42_RS00970 0.73 +0.5
230,213 + +1.0
230,213 + +0.3
230,213 + -0.6
230,214 - +1.3
230,234 + -0.8
230,234 + +0.7
230,234 + +0.2
230,234 + +0.7
230,234 + -0.3
230,235 - +0.0
230,235 - +0.7
230,235 - -1.8
230,235 - -0.1
230,345 + RR42_RS00975 0.13 -1.1
230,547 - RR42_RS00975 0.35 -0.8
230,547 - RR42_RS00975 0.35 -3.1
230,900 + RR42_RS00975 0.73 +0.5
230,900 + RR42_RS00975 0.73 -0.5
230,901 - RR42_RS00975 0.73 -1.7
231,141 - +0.8
231,141 - -0.0
231,392 + RR42_RS00980 0.28 -2.3
231,392 + RR42_RS00980 0.28 -1.2
231,392 + RR42_RS00980 0.28 +0.9
231,392 + RR42_RS00980 0.28 +0.8
231,393 - RR42_RS00980 0.28 -0.4
231,393 - RR42_RS00980 0.28 -0.0
231,393 - RR42_RS00980 0.28 +0.0
231,393 - RR42_RS00980 0.28 +1.2
231,470 + RR42_RS00980 0.41 +0.8
231,979 + RR42_RS00985 0.16 -0.3
232,011 + RR42_RS00985 0.21 -1.0
232,011 + RR42_RS00985 0.21 +0.8
232,011 + RR42_RS00985 0.21 -1.2
232,011 + RR42_RS00985 0.21 -1.8
232,013 + RR42_RS00985 0.21 -0.8
232,014 - RR42_RS00985 0.21 -0.3
232,014 - RR42_RS00985 0.21 -2.3
232,077 + RR42_RS00985 0.32 -0.6
232,078 - RR42_RS00985 0.32 +0.6
232,078 - RR42_RS00985 0.32 -2.1
232,091 - RR42_RS00985 0.34 +0.9
232,116 + RR42_RS00985 0.38 +2.8
232,116 + RR42_RS00985 0.38 -0.0
232,116 + RR42_RS00985 0.38 +0.5
232,116 + RR42_RS00985 0.38 +0.3
232,117 - RR42_RS00985 0.38 -0.8
232,152 + RR42_RS00985 0.44 -0.2
232,153 - RR42_RS00985 0.44 +1.0

Or see this region's nucleotide sequence