Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00845 and RR42_RS00850 overlap by 4 nucleotides RR42_RS00850 and RR42_RS00855 are separated by 532 nucleotides RR42_RS00855 and RR42_RS00860 are separated by 198 nucleotides RR42_RS00860 and RR42_RS00865 are separated by 85 nucleotides
RR42_RS00845: RR42_RS00845 - metal ABC transporter substrate-binding protein, at 205,900 to 206,736
_RS00845
RR42_RS00850: RR42_RS00850 - hypothetical protein, at 206,733 to 206,993
_RS00850
RR42_RS00855: RR42_RS00855 - Zn-dependent hydrolase, at 207,526 to 208,599
_RS00855
RR42_RS00860: RR42_RS00860 - MerR family transcriptional regulator, at 208,798 to 209,232
_RS00860
RR42_RS00865: RR42_RS00865 - phenylacetic acid degradation protein PaaI, at 209,318 to 209,776
_RS00865
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 206.544 kb on + strand, within RR42_RS00845 at 206.544 kb on + strand, within RR42_RS00845 at 206.590 kb on + strand, within RR42_RS00845 at 206.707 kb on + strand at 206.707 kb on + strand at 206.707 kb on + strand at 206.708 kb on - strand at 206.708 kb on - strand at 206.708 kb on - strand at 206.734 kb on + strand at 207.534 kb on + strand at 207.541 kb on - strand at 207.643 kb on - strand, within RR42_RS00855 at 207.688 kb on - strand, within RR42_RS00855 at 207.765 kb on + strand, within RR42_RS00855 at 207.765 kb on + strand, within RR42_RS00855 at 207.765 kb on + strand, within RR42_RS00855 at 207.766 kb on - strand, within RR42_RS00855 at 207.766 kb on - strand, within RR42_RS00855 at 207.766 kb on - strand, within RR42_RS00855 at 207.766 kb on - strand, within RR42_RS00855 at 207.830 kb on + strand, within RR42_RS00855 at 207.830 kb on + strand, within RR42_RS00855 at 207.831 kb on - strand, within RR42_RS00855 at 207.831 kb on - strand, within RR42_RS00855 at 207.831 kb on - strand, within RR42_RS00855 at 207.851 kb on + strand, within RR42_RS00855 at 207.851 kb on + strand, within RR42_RS00855 at 207.852 kb on - strand, within RR42_RS00855 at 207.852 kb on - strand, within RR42_RS00855 at 207.852 kb on - strand, within RR42_RS00855 at 207.853 kb on + strand, within RR42_RS00855 at 207.854 kb on - strand, within RR42_RS00855 at 207.854 kb on - strand, within RR42_RS00855 at 207.854 kb on - strand, within RR42_RS00855 at 207.960 kb on - strand, within RR42_RS00855 at 207.967 kb on + strand, within RR42_RS00855 at 207.967 kb on + strand, within RR42_RS00855 at 207.967 kb on + strand, within RR42_RS00855 at 207.967 kb on + strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 208.036 kb on - strand, within RR42_RS00855 at 208.036 kb on - strand, within RR42_RS00855 at 208.101 kb on - strand, within RR42_RS00855 at 208.101 kb on - strand, within RR42_RS00855 at 208.103 kb on + strand, within RR42_RS00855 at 208.103 kb on + strand, within RR42_RS00855 at 208.103 kb on + strand, within RR42_RS00855 at 208.103 kb on + strand, within RR42_RS00855 at 208.238 kb on + strand, within RR42_RS00855 at 208.238 kb on + strand, within RR42_RS00855 at 208.238 kb on + strand, within RR42_RS00855 at 208.238 kb on + strand, within RR42_RS00855 at 208.239 kb on - strand, within RR42_RS00855 at 208.239 kb on - strand, within RR42_RS00855 at 208.511 kb on + strand at 208.511 kb on + strand at 208.676 kb on - strand at 208.706 kb on + strand at 208.743 kb on + strand at 208.744 kb on - strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.826 kb on - strand at 208.826 kb on - strand at 208.882 kb on + strand, within RR42_RS00860 at 208.945 kb on - strand, within RR42_RS00860 at 209.036 kb on - strand, within RR42_RS00860 at 209.036 kb on - strand, within RR42_RS00860 at 209.151 kb on - strand, within RR42_RS00860 at 209.233 kb on + strand at 209.242 kb on - strand at 209.280 kb on - strand at 209.290 kb on - strand at 209.295 kb on - strand at 209.455 kb on + strand, within RR42_RS00865 at 209.455 kb on + strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.591 kb on + strand, within RR42_RS00865 at 209.591 kb on + strand, within RR42_RS00865 at 209.592 kb on - strand, within RR42_RS00865
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 206,544 + RR42_RS00845 0.77 +1.0 206,544 + RR42_RS00845 0.77 -0.2 206,590 + RR42_RS00845 0.82 -0.3 206,707 + -2.0 206,707 + -0.3 206,707 + +0.7 206,708 - +0.1 206,708 - -1.3 206,708 - +0.5 206,734 + -1.1 207,534 + +0.0 207,541 - -0.1 207,643 - RR42_RS00855 0.11 -1.4 207,688 - RR42_RS00855 0.15 +1.6 207,765 + RR42_RS00855 0.22 +0.6 207,765 + RR42_RS00855 0.22 -0.0 207,765 + RR42_RS00855 0.22 -0.2 207,766 - RR42_RS00855 0.22 +1.6 207,766 - RR42_RS00855 0.22 -0.3 207,766 - RR42_RS00855 0.22 +0.2 207,766 - RR42_RS00855 0.22 -0.7 207,830 + RR42_RS00855 0.28 -0.3 207,830 + RR42_RS00855 0.28 -0.2 207,831 - RR42_RS00855 0.28 +0.9 207,831 - RR42_RS00855 0.28 -1.1 207,831 - RR42_RS00855 0.28 -1.6 207,851 + RR42_RS00855 0.30 -2.2 207,851 + RR42_RS00855 0.30 -0.6 207,852 - RR42_RS00855 0.30 +0.0 207,852 - RR42_RS00855 0.30 -0.9 207,852 - RR42_RS00855 0.30 +1.8 207,853 + RR42_RS00855 0.30 -0.0 207,854 - RR42_RS00855 0.31 +0.7 207,854 - RR42_RS00855 0.31 -0.9 207,854 - RR42_RS00855 0.31 -1.4 207,960 - RR42_RS00855 0.40 -0.8 207,967 + RR42_RS00855 0.41 -0.0 207,967 + RR42_RS00855 0.41 -0.2 207,967 + RR42_RS00855 0.41 -1.6 207,967 + RR42_RS00855 0.41 -0.3 207,968 - RR42_RS00855 0.41 -0.1 207,968 - RR42_RS00855 0.41 -0.5 207,968 - RR42_RS00855 0.41 +0.2 207,968 - RR42_RS00855 0.41 +0.5 207,968 - RR42_RS00855 0.41 -0.9 208,036 - RR42_RS00855 0.47 +0.1 208,036 - RR42_RS00855 0.47 -1.0 208,101 - RR42_RS00855 0.54 -0.0 208,101 - RR42_RS00855 0.54 -0.2 208,103 + RR42_RS00855 0.54 -1.0 208,103 + RR42_RS00855 0.54 -1.6 208,103 + RR42_RS00855 0.54 -2.3 208,103 + RR42_RS00855 0.54 -0.9 208,238 + RR42_RS00855 0.66 +1.0 208,238 + RR42_RS00855 0.66 +0.1 208,238 + RR42_RS00855 0.66 +0.1 208,238 + RR42_RS00855 0.66 -0.5 208,239 - RR42_RS00855 0.66 +0.7 208,239 - RR42_RS00855 0.66 -0.1 208,511 + -2.3 208,511 + -1.4 208,676 - +0.2 208,706 + -2.8 208,743 + -1.0 208,744 - +0.5 208,825 + -0.0 208,825 + +1.4 208,825 + +0.4 208,825 + -1.6 208,826 - +0.7 208,826 - +0.8 208,882 + RR42_RS00860 0.19 +0.1 208,945 - RR42_RS00860 0.34 -0.7 209,036 - RR42_RS00860 0.55 +0.7 209,036 - RR42_RS00860 0.55 -1.6 209,151 - RR42_RS00860 0.81 +2.1 209,233 + -0.5 209,242 - -0.6 209,280 - +0.6 209,290 - +0.0 209,295 - -2.4 209,455 + RR42_RS00865 0.30 +0.2 209,455 + RR42_RS00865 0.30 +0.4 209,456 - RR42_RS00865 0.30 -3.2 209,456 - RR42_RS00865 0.30 -2.1 209,456 - RR42_RS00865 0.30 -0.4 209,456 - RR42_RS00865 0.30 +0.4 209,591 + RR42_RS00865 0.59 +0.3 209,591 + RR42_RS00865 0.59 +0.5 209,592 - RR42_RS00865 0.60 -0.8
Or see this region's nucleotide sequence