Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00765

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00755 and RR42_RS00760 are separated by 251 nucleotidesRR42_RS00760 and RR42_RS00765 are separated by 149 nucleotidesRR42_RS00765 and RR42_RS00770 are separated by 177 nucleotides RR42_RS00755: RR42_RS00755 - 3-oxoadipate enol-lactonase, at 189,546 to 190,388 _RS00755 RR42_RS00760: RR42_RS00760 - hypothetical protein, at 190,640 to 190,897 _RS00760 RR42_RS00765: RR42_RS00765 - sulfurtransferase, at 191,047 to 191,439 _RS00765 RR42_RS00770: RR42_RS00770 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 191,617 to 192,684 _RS00770 Position (kb) 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 190.184 kb on + strand, within RR42_RS00755at 190.184 kb on + strand, within RR42_RS00755at 190.305 kb on - strandat 190.381 kb on + strandat 190.381 kb on + strandat 190.381 kb on + strandat 190.381 kb on + strandat 190.382 kb on - strandat 190.382 kb on - strandat 190.382 kb on - strandat 190.475 kb on + strandat 190.475 kb on + strandat 190.475 kb on + strandat 190.475 kb on + strandat 190.475 kb on + strandat 190.476 kb on - strandat 190.490 kb on + strandat 190.634 kb on + strandat 190.635 kb on - strandat 190.635 kb on - strandat 190.653 kb on - strandat 190.653 kb on - strandat 190.725 kb on - strand, within RR42_RS00760at 190.864 kb on + strand, within RR42_RS00760at 190.864 kb on + strand, within RR42_RS00760at 190.865 kb on - strand, within RR42_RS00760at 190.865 kb on - strand, within RR42_RS00760at 190.895 kb on + strandat 190.896 kb on - strandat 190.896 kb on - strandat 190.964 kb on - strandat 190.998 kb on + strandat 190.998 kb on + strandat 191.051 kb on + strandat 191.051 kb on + strandat 191.052 kb on - strandat 191.052 kb on - strandat 191.052 kb on - strandat 191.094 kb on + strand, within RR42_RS00765at 191.094 kb on + strand, within RR42_RS00765at 191.094 kb on + strand, within RR42_RS00765at 191.094 kb on + strand, within RR42_RS00765at 191.095 kb on - strand, within RR42_RS00765at 191.095 kb on - strand, within RR42_RS00765at 191.147 kb on + strand, within RR42_RS00765at 191.148 kb on - strand, within RR42_RS00765at 191.351 kb on + strand, within RR42_RS00765at 191.351 kb on + strand, within RR42_RS00765at 191.352 kb on - strand, within RR42_RS00765at 191.352 kb on - strand, within RR42_RS00765at 191.352 kb on - strand, within RR42_RS00765at 191.374 kb on + strand, within RR42_RS00765at 191.487 kb on + strandat 191.573 kb on + strandat 191.573 kb on + strandat 191.573 kb on + strandat 191.574 kb on - strandat 191.574 kb on - strandat 191.662 kb on + strandat 191.663 kb on - strandat 191.746 kb on + strand, within RR42_RS00770at 191.746 kb on + strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.832 kb on - strand, within RR42_RS00770at 191.869 kb on + strand, within RR42_RS00770at 191.870 kb on - strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.905 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.090 kb on - strand, within RR42_RS00770at 192.090 kb on - strand, within RR42_RS00770at 192.139 kb on + strand, within RR42_RS00770at 192.140 kb on - strand, within RR42_RS00770at 192.140 kb on - strand, within RR42_RS00770at 192.142 kb on + strand, within RR42_RS00770at 192.143 kb on - strand, within RR42_RS00770at 192.143 kb on - strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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190,184 + RR42_RS00755 0.76 -1.0
190,184 + RR42_RS00755 0.76 -2.1
190,305 - -0.1
190,381 + -0.6
190,381 + +0.8
190,381 + +0.2
190,381 + +1.6
190,382 - -0.1
190,382 - -0.8
190,382 - -1.1
190,475 + +0.2
190,475 + -2.5
190,475 + -0.2
190,475 + -0.4
190,475 + -2.6
190,476 - -0.5
190,490 + -1.0
190,634 + +2.7
190,635 - +0.4
190,635 - +0.5
190,653 - -1.0
190,653 - +1.7
190,725 - RR42_RS00760 0.33 +1.3
190,864 + RR42_RS00760 0.87 +0.2
190,864 + RR42_RS00760 0.87 +1.1
190,865 - RR42_RS00760 0.87 -0.9
190,865 - RR42_RS00760 0.87 -0.8
190,895 + +0.1
190,896 - +0.0
190,896 - +1.1
190,964 - -0.4
190,998 + -0.7
190,998 + +0.3
191,051 + +1.1
191,051 + -1.6
191,052 - +0.9
191,052 - +0.1
191,052 - +0.4
191,094 + RR42_RS00765 0.12 -0.8
191,094 + RR42_RS00765 0.12 -0.8
191,094 + RR42_RS00765 0.12 -0.5
191,094 + RR42_RS00765 0.12 -0.1
191,095 - RR42_RS00765 0.12 +1.1
191,095 - RR42_RS00765 0.12 -0.8
191,147 + RR42_RS00765 0.25 -0.3
191,148 - RR42_RS00765 0.26 +0.8
191,351 + RR42_RS00765 0.77 -0.7
191,351 + RR42_RS00765 0.77 -1.9
191,352 - RR42_RS00765 0.78 -1.5
191,352 - RR42_RS00765 0.78 +0.3
191,352 - RR42_RS00765 0.78 -1.6
191,374 + RR42_RS00765 0.83 +2.0
191,487 + -1.0
191,573 + -1.8
191,573 + +2.2
191,573 + +1.3
191,574 - +0.2
191,574 - -0.6
191,662 + -0.9
191,663 - -0.4
191,746 + RR42_RS00770 0.12 -1.9
191,746 + RR42_RS00770 0.12 -2.1
191,747 - RR42_RS00770 0.12 +0.3
191,747 - RR42_RS00770 0.12 -2.4
191,747 - RR42_RS00770 0.12 -1.0
191,832 - RR42_RS00770 0.20 -0.2
191,869 + RR42_RS00770 0.24 -0.0
191,870 - RR42_RS00770 0.24 -0.1
191,904 + RR42_RS00770 0.27 -3.1
191,904 + RR42_RS00770 0.27 -0.7
191,904 + RR42_RS00770 0.27 +0.2
191,904 + RR42_RS00770 0.27 +0.5
191,905 - RR42_RS00770 0.27 -0.0
191,939 - RR42_RS00770 0.30 +0.9
191,939 - RR42_RS00770 0.30 +1.0
191,939 - RR42_RS00770 0.30 +1.2
192,011 - RR42_RS00770 0.37 -0.2
192,011 - RR42_RS00770 0.37 -1.4
192,011 - RR42_RS00770 0.37 -1.4
192,090 - RR42_RS00770 0.44 +1.1
192,090 - RR42_RS00770 0.44 +1.4
192,139 + RR42_RS00770 0.49 +0.3
192,140 - RR42_RS00770 0.49 +0.1
192,140 - RR42_RS00770 0.49 +0.3
192,142 + RR42_RS00770 0.49 -1.1
192,143 - RR42_RS00770 0.49 -0.9
192,143 - RR42_RS00770 0.49 -0.8
192,421 + RR42_RS00770 0.75 +0.9
192,421 + RR42_RS00770 0.75 -0.8
192,421 + RR42_RS00770 0.75 -0.4

Or see this region's nucleotide sequence