Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00635 and RR42_RS00640 are separated by 677 nucleotides RR42_RS00640 and RR42_RS00645 overlap by 4 nucleotides
RR42_RS00635: RR42_RS00635 - lipoyl synthase, at 164,909 to 165,904
_RS00635
RR42_RS00640: RR42_RS00640 - allophanate hydrolase, at 166,582 to 167,232
_RS00640
RR42_RS00645: RR42_RS00645 - allophanate hydrolase, at 167,229 to 168,251
_RS00645
Position (kb) 166
167
168 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 165.991 kb on + strand at 165.991 kb on + strand at 165.991 kb on + strand at 165.992 kb on - strand at 165.992 kb on - strand at 165.992 kb on - strand at 165.995 kb on + strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 166.043 kb on + strand at 166.043 kb on + strand at 166.044 kb on - strand at 166.044 kb on - strand at 166.397 kb on + strand at 166.411 kb on + strand at 166.412 kb on - strand at 166.424 kb on + strand at 166.424 kb on + strand at 166.424 kb on + strand at 166.424 kb on + strand at 166.449 kb on + strand at 166.467 kb on - strand at 166.528 kb on + strand at 166.529 kb on - strand at 166.529 kb on - strand at 166.546 kb on + strand at 166.546 kb on + strand at 166.546 kb on + strand at 166.546 kb on + strand at 166.546 kb on + strand at 166.653 kb on - strand, within RR42_RS00640 at 166.653 kb on - strand, within RR42_RS00640 at 166.653 kb on - strand, within RR42_RS00640 at 166.658 kb on + strand, within RR42_RS00640 at 166.658 kb on + strand, within RR42_RS00640 at 166.658 kb on + strand, within RR42_RS00640 at 166.659 kb on - strand, within RR42_RS00640 at 166.659 kb on - strand, within RR42_RS00640 at 166.659 kb on - strand, within RR42_RS00640 at 166.659 kb on - strand, within RR42_RS00640 at 166.659 kb on - strand, within RR42_RS00640 at 166.659 kb on - strand, within RR42_RS00640 at 166.668 kb on + strand, within RR42_RS00640 at 166.668 kb on + strand, within RR42_RS00640 at 166.668 kb on + strand, within RR42_RS00640 at 166.669 kb on - strand, within RR42_RS00640 at 166.951 kb on + strand, within RR42_RS00640 at 166.960 kb on + strand, within RR42_RS00640 at 166.960 kb on + strand, within RR42_RS00640 at 166.961 kb on - strand, within RR42_RS00640 at 166.961 kb on - strand, within RR42_RS00640 at 166.990 kb on + strand, within RR42_RS00640 at 166.990 kb on + strand, within RR42_RS00640 at 166.990 kb on + strand, within RR42_RS00640 at 166.990 kb on + strand, within RR42_RS00640 at 166.991 kb on - strand, within RR42_RS00640 at 166.991 kb on - strand, within RR42_RS00640 at 166.991 kb on - strand, within RR42_RS00640 at 166.992 kb on + strand, within RR42_RS00640 at 166.992 kb on + strand, within RR42_RS00640 at 166.993 kb on - strand, within RR42_RS00640 at 167.095 kb on + strand, within RR42_RS00640 at 167.562 kb on + strand, within RR42_RS00645 at 167.562 kb on + strand, within RR42_RS00645 at 167.562 kb on + strand, within RR42_RS00645 at 167.562 kb on + strand, within RR42_RS00645 at 167.563 kb on - strand, within RR42_RS00645 at 168.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 165,991 + +0.5 165,991 + +0.3 165,991 + +2.6 165,992 - -0.0 165,992 - +0.7 165,992 - +0.4 165,995 + +1.7 165,996 - +0.9 165,996 - -0.1 165,996 - -3.6 166,043 + -1.1 166,043 + +1.9 166,044 - +0.6 166,044 - +0.1 166,397 + +0.5 166,411 + -2.4 166,412 - +0.2 166,424 + +0.9 166,424 + +0.0 166,424 + +0.9 166,424 + +0.0 166,449 + +1.4 166,467 - +0.2 166,528 + -1.4 166,529 - -0.4 166,529 - -0.5 166,546 + -0.9 166,546 + +0.6 166,546 + -0.0 166,546 + -0.1 166,546 + -1.1 166,653 - RR42_RS00640 0.11 -1.3 166,653 - RR42_RS00640 0.11 +1.1 166,653 - RR42_RS00640 0.11 +1.4 166,658 + RR42_RS00640 0.12 +1.1 166,658 + RR42_RS00640 0.12 +0.5 166,658 + RR42_RS00640 0.12 -1.8 166,659 - RR42_RS00640 0.12 +0.1 166,659 - RR42_RS00640 0.12 +3.0 166,659 - RR42_RS00640 0.12 -1.1 166,659 - RR42_RS00640 0.12 +0.4 166,659 - RR42_RS00640 0.12 +1.0 166,659 - RR42_RS00640 0.12 -0.2 166,668 + RR42_RS00640 0.13 +1.5 166,668 + RR42_RS00640 0.13 +1.1 166,668 + RR42_RS00640 0.13 -1.7 166,669 - RR42_RS00640 0.13 +1.8 166,951 + RR42_RS00640 0.57 +0.1 166,960 + RR42_RS00640 0.58 +0.1 166,960 + RR42_RS00640 0.58 -1.0 166,961 - RR42_RS00640 0.58 -1.8 166,961 - RR42_RS00640 0.58 +0.8 166,990 + RR42_RS00640 0.63 +0.3 166,990 + RR42_RS00640 0.63 -0.2 166,990 + RR42_RS00640 0.63 +1.2 166,990 + RR42_RS00640 0.63 -2.1 166,991 - RR42_RS00640 0.63 +1.7 166,991 - RR42_RS00640 0.63 +1.0 166,991 - RR42_RS00640 0.63 -4.0 166,992 + RR42_RS00640 0.63 -0.1 166,992 + RR42_RS00640 0.63 +0.2 166,993 - RR42_RS00640 0.63 -1.6 167,095 + RR42_RS00640 0.79 +3.2 167,562 + RR42_RS00645 0.33 +1.1 167,562 + RR42_RS00645 0.33 +0.2 167,562 + RR42_RS00645 0.33 -1.4 167,562 + RR42_RS00645 0.33 +0.4 167,563 - RR42_RS00645 0.33 +0.5 168,157 - +1.5
Or see this region's nucleotide sequence