Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00600 and RR42_RS00605 are separated by 106 nucleotides RR42_RS00605 and RR42_RS00610 are separated by 169 nucleotides RR42_RS00610 and RR42_RS00615 are separated by 35 nucleotides
RR42_RS00600: RR42_RS00600 - DeoR family transcriptional regulator, at 157,874 to 158,845
_RS00600
RR42_RS00605: RR42_RS00605 - glutamyl-tRNA amidotransferase, at 158,952 to 160,412
_RS00605
RR42_RS00610: RR42_RS00610 - hypothetical protein, at 160,582 to 161,250
_RS00610
RR42_RS00615: RR42_RS00615 - recombinase XerC, at 161,286 to 162,410
_RS00615
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.678 kb on + strand, within RR42_RS00600 at 158.855 kb on + strand at 158.861 kb on + strand at 158.861 kb on + strand at 158.861 kb on + strand at 158.865 kb on + strand at 158.865 kb on + strand at 158.865 kb on + strand at 158.905 kb on + strand at 158.905 kb on + strand at 158.905 kb on + strand at 158.916 kb on + strand at 158.916 kb on + strand at 158.916 kb on + strand at 158.926 kb on + strand at 158.926 kb on + strand at 158.926 kb on + strand at 160.410 kb on + strand at 160.420 kb on - strand at 160.457 kb on + strand at 160.458 kb on - strand at 160.550 kb on - strand at 160.606 kb on + strand at 160.606 kb on + strand at 160.607 kb on - strand at 160.861 kb on + strand at 160.862 kb on - strand, within RR42_RS00610 at 160.939 kb on + strand, within RR42_RS00610 at 160.939 kb on + strand, within RR42_RS00610 at 160.940 kb on - strand, within RR42_RS00610 at 160.940 kb on - strand, within RR42_RS00610 at 160.940 kb on - strand, within RR42_RS00610 at 160.940 kb on - strand, within RR42_RS00610 at 161.011 kb on + strand, within RR42_RS00610 at 161.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 158,678 + RR42_RS00600 0.83 +1.4 158,855 + +0.1 158,861 + +0.7 158,861 + -1.3 158,861 + +1.6 158,865 + -0.1 158,865 + -0.1 158,865 + -0.3 158,905 + +1.1 158,905 + -0.7 158,905 + +1.8 158,916 + -3.0 158,916 + -0.6 158,916 + -1.7 158,926 + +2.1 158,926 + -0.0 158,926 + +0.4 160,410 + +0.7 160,420 - +0.1 160,457 + +0.4 160,458 - -0.3 160,550 - -2.2 160,606 + +1.7 160,606 + -2.3 160,607 - -3.3 160,861 + +0.2 160,862 - RR42_RS00610 0.42 +0.1 160,939 + RR42_RS00610 0.53 -2.4 160,939 + RR42_RS00610 0.53 -0.3 160,940 - RR42_RS00610 0.54 -0.6 160,940 - RR42_RS00610 0.54 +0.7 160,940 - RR42_RS00610 0.54 -2.5 160,940 - RR42_RS00610 0.54 -1.6 161,011 + RR42_RS00610 0.64 +0.7 161,195 - -0.1
Or see this region's nucleotide sequence