Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00385 and RR42_RS00390 are separated by 457 nucleotides RR42_RS00390 and RR42_RS00395 are separated by 104 nucleotides
RR42_RS00385: RR42_RS00385 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 103,275 to 104,117
_RS00385
RR42_RS00390: RR42_RS00390 - amidohydrolase, at 104,575 to 105,843
_RS00390
RR42_RS00395: RR42_RS00395 - AraC family transcriptional regulator, at 105,948 to 106,829
_RS00395
Position (kb) 104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 103.947 kb on + strand, within RR42_RS00385 at 104.109 kb on + strand at 104.115 kb on + strand at 104.115 kb on + strand at 104.116 kb on - strand at 104.199 kb on + strand at 104.199 kb on + strand at 104.203 kb on + strand at 104.251 kb on + strand at 104.351 kb on + strand at 104.376 kb on - strand at 104.476 kb on - strand at 104.486 kb on - strand at 104.517 kb on + strand at 104.536 kb on + strand at 104.546 kb on - strand at 104.568 kb on + strand at 104.815 kb on + strand, within RR42_RS00390 at 104.945 kb on - strand, within RR42_RS00390 at 105.234 kb on + strand, within RR42_RS00390 at 105.530 kb on - strand, within RR42_RS00390 at 105.553 kb on + strand, within RR42_RS00390 at 105.554 kb on - strand, within RR42_RS00390 at 105.554 kb on - strand, within RR42_RS00390 at 105.554 kb on - strand, within RR42_RS00390 at 105.688 kb on + strand, within RR42_RS00390 at 105.689 kb on - strand, within RR42_RS00390 at 105.766 kb on + strand at 105.805 kb on + strand at 105.829 kb on + strand at 105.829 kb on + strand at 105.829 kb on + strand at 105.830 kb on - strand at 105.841 kb on + strand at 105.841 kb on + strand at 105.995 kb on + strand at 105.996 kb on - strand at 105.996 kb on - strand at 106.454 kb on + strand, within RR42_RS00395 at 106.455 kb on - strand, within RR42_RS00395 at 106.456 kb on + strand, within RR42_RS00395 at 106.456 kb on + strand, within RR42_RS00395 at 106.456 kb on + strand, within RR42_RS00395 at 106.456 kb on + strand, within RR42_RS00395 at 106.457 kb on - strand, within RR42_RS00395 at 106.645 kb on + strand, within RR42_RS00395 at 106.646 kb on - strand, within RR42_RS00395 at 106.646 kb on - strand, within RR42_RS00395 at 106.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 103,947 + RR42_RS00385 0.80 +0.4 104,109 + -0.8 104,115 + +0.7 104,115 + +0.8 104,116 - -3.3 104,199 + +0.3 104,199 + -0.5 104,203 + +0.0 104,251 + -0.1 104,351 + -0.1 104,376 - +0.4 104,476 - +1.7 104,486 - -0.4 104,517 + +0.5 104,536 + -2.0 104,546 - +0.8 104,568 + -2.4 104,815 + RR42_RS00390 0.19 +0.9 104,945 - RR42_RS00390 0.29 -2.9 105,234 + RR42_RS00390 0.52 +0.7 105,530 - RR42_RS00390 0.75 +1.4 105,553 + RR42_RS00390 0.77 -0.4 105,554 - RR42_RS00390 0.77 +0.6 105,554 - RR42_RS00390 0.77 +0.3 105,554 - RR42_RS00390 0.77 +0.2 105,688 + RR42_RS00390 0.88 -2.6 105,689 - RR42_RS00390 0.88 +0.1 105,766 + -1.5 105,805 + -0.1 105,829 + +1.5 105,829 + +0.7 105,829 + -1.5 105,830 - -0.1 105,841 + -0.2 105,841 + +1.5 105,995 + -0.6 105,996 - -1.0 105,996 - -2.5 106,454 + RR42_RS00395 0.57 -0.3 106,455 - RR42_RS00395 0.57 +0.4 106,456 + RR42_RS00395 0.58 -0.5 106,456 + RR42_RS00395 0.58 +0.4 106,456 + RR42_RS00395 0.58 -0.2 106,456 + RR42_RS00395 0.58 -0.2 106,457 - RR42_RS00395 0.58 -1.1 106,645 + RR42_RS00395 0.79 -0.4 106,646 - RR42_RS00395 0.79 +0.6 106,646 - RR42_RS00395 0.79 +0.6 106,779 - -0.1
Or see this region's nucleotide sequence