Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07890 and PGA1_c07900 are separated by 31 nucleotides PGA1_c07900 and PGA1_c07910 are separated by 9 nucleotides
PGA1_c07890: PGA1_c07890 - cytoplasmic trehalase (AlgA) <small>(from data)</small>, at 818,009 to 819,667
_c07890
PGA1_c07900: PGA1_c07900 - alpha-glucoside transport ATP-binding protein AglK, at 819,699 to 820,790
_c07900
PGA1_c07910: PGA1_c07910 - ABC-type Fe3+ transport system, periplasmic component, at 820,800 to 821,822
_c07910
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 818.975 kb on - strand, within PGA1_c07890 at 819.017 kb on + strand, within PGA1_c07890 at 819.082 kb on - strand, within PGA1_c07890 at 819.124 kb on + strand, within PGA1_c07890 at 819.134 kb on + strand, within PGA1_c07890 at 819.155 kb on + strand, within PGA1_c07890 at 819.228 kb on + strand, within PGA1_c07890 at 819.265 kb on - strand, within PGA1_c07890 at 819.290 kb on - strand, within PGA1_c07890 at 819.306 kb on + strand, within PGA1_c07890 at 819.310 kb on + strand, within PGA1_c07890 at 819.399 kb on + strand, within PGA1_c07890 at 819.449 kb on - strand, within PGA1_c07890 at 819.471 kb on - strand, within PGA1_c07890 at 819.493 kb on - strand, within PGA1_c07890 at 819.549 kb on + strand at 819.556 kb on + strand at 819.731 kb on + strand at 819.731 kb on + strand at 819.739 kb on - strand at 819.739 kb on - strand at 819.810 kb on + strand, within PGA1_c07900 at 819.836 kb on + strand, within PGA1_c07900 at 819.858 kb on + strand, within PGA1_c07900 at 819.933 kb on + strand, within PGA1_c07900 at 819.965 kb on + strand, within PGA1_c07900 at 819.973 kb on - strand, within PGA1_c07900 at 819.985 kb on + strand, within PGA1_c07900 at 820.031 kb on - strand, within PGA1_c07900 at 820.099 kb on - strand, within PGA1_c07900 at 820.099 kb on - strand, within PGA1_c07900 at 820.138 kb on + strand, within PGA1_c07900 at 820.138 kb on + strand, within PGA1_c07900 at 820.168 kb on - strand, within PGA1_c07900 at 820.208 kb on - strand, within PGA1_c07900 at 820.208 kb on - strand, within PGA1_c07900 at 820.248 kb on + strand, within PGA1_c07900 at 820.256 kb on - strand, within PGA1_c07900 at 820.289 kb on - strand, within PGA1_c07900 at 820.304 kb on + strand, within PGA1_c07900 at 820.309 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.365 kb on - strand, within PGA1_c07900 at 820.470 kb on - strand, within PGA1_c07900 at 820.475 kb on + strand, within PGA1_c07900 at 820.521 kb on + strand, within PGA1_c07900 at 820.529 kb on - strand, within PGA1_c07900 at 820.529 kb on - strand, within PGA1_c07900 at 820.574 kb on + strand, within PGA1_c07900 at 820.612 kb on - strand, within PGA1_c07900 at 820.620 kb on + strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900 at 820.712 kb on - strand at 820.714 kb on + strand at 820.725 kb on - strand at 820.730 kb on - strand at 820.735 kb on - strand at 820.747 kb on + strand at 820.747 kb on + strand at 820.755 kb on - strand at 820.755 kb on - strand at 820.765 kb on - strand at 820.793 kb on - strand at 820.811 kb on + strand at 820.811 kb on + strand at 820.884 kb on + strand at 820.909 kb on - strand, within PGA1_c07910 at 820.925 kb on - strand, within PGA1_c07910 at 820.953 kb on - strand, within PGA1_c07910 at 821.047 kb on - strand, within PGA1_c07910 at 821.054 kb on + strand, within PGA1_c07910 at 821.054 kb on + strand, within PGA1_c07910 at 821.138 kb on - strand, within PGA1_c07910 at 821.139 kb on + strand, within PGA1_c07910 at 821.210 kb on + strand, within PGA1_c07910 at 821.254 kb on + strand, within PGA1_c07910 at 821.280 kb on + strand, within PGA1_c07910 at 821.314 kb on - strand, within PGA1_c07910 at 821.369 kb on + strand, within PGA1_c07910 at 821.377 kb on - strand, within PGA1_c07910 at 821.387 kb on + strand, within PGA1_c07910 at 821.589 kb on + strand, within PGA1_c07910 at 821.597 kb on - strand, within PGA1_c07910 at 821.617 kb on - strand, within PGA1_c07910 at 821.690 kb on - strand, within PGA1_c07910 at 821.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 818,975 - PGA1_c07890 0.58 +2.2 819,017 + PGA1_c07890 0.61 +0.1 819,082 - PGA1_c07890 0.65 +0.9 819,124 + PGA1_c07890 0.67 +1.1 819,134 + PGA1_c07890 0.68 +0.7 819,155 + PGA1_c07890 0.69 -1.6 819,228 + PGA1_c07890 0.73 +1.0 819,265 - PGA1_c07890 0.76 +1.4 819,290 - PGA1_c07890 0.77 +0.2 819,306 + PGA1_c07890 0.78 +1.3 819,310 + PGA1_c07890 0.78 +0.9 819,399 + PGA1_c07890 0.84 -0.6 819,449 - PGA1_c07890 0.87 +0.4 819,471 - PGA1_c07890 0.88 +0.1 819,493 - PGA1_c07890 0.89 -2.1 819,549 + -3.2 819,556 + -0.8 819,731 + +2.3 819,731 + +1.5 819,739 - +1.6 819,739 - +3.0 819,810 + PGA1_c07900 0.10 +1.1 819,836 + PGA1_c07900 0.13 +2.1 819,858 + PGA1_c07900 0.15 +1.9 819,933 + PGA1_c07900 0.21 +1.2 819,965 + PGA1_c07900 0.24 +1.3 819,973 - PGA1_c07900 0.25 -0.9 819,985 + PGA1_c07900 0.26 +3.3 820,031 - PGA1_c07900 0.30 +1.6 820,099 - PGA1_c07900 0.37 +2.0 820,099 - PGA1_c07900 0.37 +1.7 820,138 + PGA1_c07900 0.40 +1.6 820,138 + PGA1_c07900 0.40 +1.7 820,168 - PGA1_c07900 0.43 +1.4 820,208 - PGA1_c07900 0.47 +1.8 820,208 - PGA1_c07900 0.47 +1.0 820,248 + PGA1_c07900 0.50 +1.5 820,256 - PGA1_c07900 0.51 +1.0 820,289 - PGA1_c07900 0.54 +2.1 820,304 + PGA1_c07900 0.55 +1.6 820,309 + PGA1_c07900 0.56 +1.3 820,346 + PGA1_c07900 0.59 +2.0 820,346 + PGA1_c07900 0.59 +1.3 820,346 + PGA1_c07900 0.59 +1.2 820,346 + PGA1_c07900 0.59 +0.4 820,354 - PGA1_c07900 0.60 +1.6 820,354 - PGA1_c07900 0.60 +1.6 820,354 - PGA1_c07900 0.60 +1.4 820,365 - PGA1_c07900 0.61 +1.4 820,470 - PGA1_c07900 0.71 +1.5 820,475 + PGA1_c07900 0.71 +2.4 820,521 + PGA1_c07900 0.75 +1.6 820,529 - PGA1_c07900 0.76 +2.0 820,529 - PGA1_c07900 0.76 +1.9 820,574 + PGA1_c07900 0.80 +1.7 820,612 - PGA1_c07900 0.84 +0.3 820,620 + PGA1_c07900 0.84 +1.8 820,648 - PGA1_c07900 0.87 +1.8 820,648 - PGA1_c07900 0.87 +2.0 820,648 - PGA1_c07900 0.87 +2.4 820,712 - +1.5 820,714 + +1.8 820,725 - +1.7 820,730 - +1.6 820,735 - +1.4 820,747 + +1.8 820,747 + +1.9 820,755 - +2.6 820,755 - +2.2 820,765 - +0.9 820,793 - +1.0 820,811 + +0.5 820,811 + +0.0 820,884 + -1.6 820,909 - PGA1_c07910 0.11 -0.2 820,925 - PGA1_c07910 0.12 -0.5 820,953 - PGA1_c07910 0.15 -0.9 821,047 - PGA1_c07910 0.24 -0.2 821,054 + PGA1_c07910 0.25 +0.4 821,054 + PGA1_c07910 0.25 +0.7 821,138 - PGA1_c07910 0.33 -0.1 821,139 + PGA1_c07910 0.33 +0.6 821,210 + PGA1_c07910 0.40 -2.6 821,254 + PGA1_c07910 0.44 -1.1 821,280 + PGA1_c07910 0.47 -1.3 821,314 - PGA1_c07910 0.50 +0.0 821,369 + PGA1_c07910 0.56 -0.3 821,377 - PGA1_c07910 0.56 +0.4 821,387 + PGA1_c07910 0.57 +1.3 821,589 + PGA1_c07910 0.77 +0.7 821,597 - PGA1_c07910 0.78 -0.1 821,617 - PGA1_c07910 0.80 -1.5 821,690 - PGA1_c07910 0.87 -0.3 821,723 + -2.1
Or see this region's nucleotide sequence