Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07860

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07850 and PGA1_c07860 are separated by 248 nucleotidesPGA1_c07860 and PGA1_c07870 are separated by 157 nucleotides PGA1_c07850: PGA1_c07850 - transcriptional regulator, lacI family, at 812,987 to 814,018 _c07850 PGA1_c07860: PGA1_c07860 - alpha-glucosides-binding periplasmic protein AglE, at 814,267 to 815,619 _c07860 PGA1_c07870: PGA1_c07870 - alpha-glucoside transport system permease protein AglF, at 815,777 to 816,784 _c07870 Position (kb) 814 815 816Strain fitness (log2 ratio) -2 -1 0 1 2 3at 813.360 kb on + strand, within PGA1_c07850at 813.408 kb on - strand, within PGA1_c07850at 813.457 kb on - strand, within PGA1_c07850at 813.538 kb on - strand, within PGA1_c07850at 813.546 kb on + strand, within PGA1_c07850at 813.575 kb on + strand, within PGA1_c07850at 813.590 kb on + strand, within PGA1_c07850at 813.598 kb on - strand, within PGA1_c07850at 813.616 kb on - strand, within PGA1_c07850at 813.693 kb on + strand, within PGA1_c07850at 813.920 kb on + strandat 813.930 kb on + strandat 813.985 kb on + strandat 814.061 kb on - strandat 814.071 kb on - strandat 814.071 kb on - strandat 814.094 kb on - strandat 814.112 kb on + strandat 814.223 kb on - strandat 814.241 kb on + strandat 814.298 kb on + strandat 814.298 kb on + strandat 814.306 kb on - strandat 814.306 kb on - strandat 814.326 kb on + strandat 814.326 kb on + strandat 814.326 kb on + strandat 814.387 kb on - strandat 814.389 kb on + strandat 814.419 kb on + strand, within PGA1_c07860at 814.450 kb on + strand, within PGA1_c07860at 814.458 kb on - strand, within PGA1_c07860at 814.458 kb on - strand, within PGA1_c07860at 814.504 kb on + strand, within PGA1_c07860at 814.509 kb on + strand, within PGA1_c07860at 814.509 kb on + strand, within PGA1_c07860at 814.523 kb on - strand, within PGA1_c07860at 814.560 kb on + strand, within PGA1_c07860at 814.611 kb on + strand, within PGA1_c07860at 814.619 kb on - strand, within PGA1_c07860at 814.647 kb on - strand, within PGA1_c07860at 814.652 kb on - strand, within PGA1_c07860at 814.692 kb on + strand, within PGA1_c07860at 814.692 kb on + strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.720 kb on - strand, within PGA1_c07860at 814.752 kb on + strand, within PGA1_c07860at 814.760 kb on - strand, within PGA1_c07860at 814.838 kb on - strand, within PGA1_c07860at 814.861 kb on + strand, within PGA1_c07860at 814.885 kb on + strand, within PGA1_c07860at 814.940 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 815.036 kb on + strand, within PGA1_c07860at 815.123 kb on + strand, within PGA1_c07860at 815.126 kb on + strand, within PGA1_c07860at 815.131 kb on - strand, within PGA1_c07860at 815.166 kb on + strand, within PGA1_c07860at 815.204 kb on + strand, within PGA1_c07860at 815.260 kb on + strand, within PGA1_c07860at 815.270 kb on + strand, within PGA1_c07860at 815.270 kb on + strand, within PGA1_c07860at 815.278 kb on - strand, within PGA1_c07860at 815.278 kb on - strand, within PGA1_c07860at 815.293 kb on - strand, within PGA1_c07860at 815.293 kb on - strand, within PGA1_c07860at 815.370 kb on - strand, within PGA1_c07860at 815.380 kb on + strand, within PGA1_c07860at 815.398 kb on + strand, within PGA1_c07860at 815.407 kb on + strand, within PGA1_c07860at 815.408 kb on - strand, within PGA1_c07860at 815.429 kb on + strand, within PGA1_c07860at 815.468 kb on + strand, within PGA1_c07860at 815.470 kb on + strand, within PGA1_c07860at 815.492 kb on + strandat 815.500 kb on - strandat 815.537 kb on - strandat 815.577 kb on + strandat 815.613 kb on + strandat 815.622 kb on - strandat 815.639 kb on - strandat 815.710 kb on - strandat 815.717 kb on + strandat 815.719 kb on + strandat 815.798 kb on - strandat 815.800 kb on + strandat 815.819 kb on - strandat 815.867 kb on - strandat 815.930 kb on - strand, within PGA1_c07870at 815.964 kb on + strand, within PGA1_c07870at 815.988 kb on - strand, within PGA1_c07870at 815.993 kb on - strand, within PGA1_c07870at 816.025 kb on + strand, within PGA1_c07870at 816.033 kb on - strand, within PGA1_c07870at 816.153 kb on + strand, within PGA1_c07870at 816.161 kb on - strand, within PGA1_c07870at 816.168 kb on + strand, within PGA1_c07870at 816.168 kb on + strand, within PGA1_c07870at 816.176 kb on - strand, within PGA1_c07870at 816.311 kb on + strand, within PGA1_c07870at 816.356 kb on - strand, within PGA1_c07870at 816.401 kb on + strand, within PGA1_c07870at 816.431 kb on - strand, within PGA1_c07870at 816.452 kb on - strand, within PGA1_c07870at 816.452 kb on - strand, within PGA1_c07870at 816.499 kb on + strand, within PGA1_c07870at 816.579 kb on + strand, within PGA1_c07870at 816.580 kb on - strand, within PGA1_c07870at 816.614 kb on + strand, within PGA1_c07870at 816.619 kb on + strand, within PGA1_c07870

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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813,360 + PGA1_c07850 0.36 -1.3
813,408 - PGA1_c07850 0.41 -1.1
813,457 - PGA1_c07850 0.46 -0.2
813,538 - PGA1_c07850 0.53 +0.1
813,546 + PGA1_c07850 0.54 +0.6
813,575 + PGA1_c07850 0.57 -0.6
813,590 + PGA1_c07850 0.58 +0.2
813,598 - PGA1_c07850 0.59 -0.1
813,616 - PGA1_c07850 0.61 -0.1
813,693 + PGA1_c07850 0.68 +0.2
813,920 + -0.3
813,930 + -1.1
813,985 + -0.1
814,061 - -0.5
814,071 - +0.2
814,071 - +0.5
814,094 - -0.7
814,112 + -2.0
814,223 - +0.9
814,241 + +1.8
814,298 + +2.4
814,298 + +0.8
814,306 - +1.8
814,306 - +1.7
814,326 + +1.7
814,326 + +0.2
814,326 + +2.7
814,387 - +2.1
814,389 + +1.8
814,419 + PGA1_c07860 0.11 +3.3
814,450 + PGA1_c07860 0.14 +0.3
814,458 - PGA1_c07860 0.14 +1.7
814,458 - PGA1_c07860 0.14 +1.1
814,504 + PGA1_c07860 0.18 +2.5
814,509 + PGA1_c07860 0.18 +1.9
814,509 + PGA1_c07860 0.18 +1.8
814,523 - PGA1_c07860 0.19 +2.3
814,560 + PGA1_c07860 0.22 +1.7
814,611 + PGA1_c07860 0.25 +1.5
814,619 - PGA1_c07860 0.26 +2.0
814,647 - PGA1_c07860 0.28 +2.0
814,652 - PGA1_c07860 0.28 +1.6
814,692 + PGA1_c07860 0.31 +2.8
814,692 + PGA1_c07860 0.31 +1.9
814,700 - PGA1_c07860 0.32 +1.8
814,700 - PGA1_c07860 0.32 +1.5
814,700 - PGA1_c07860 0.32 +1.5
814,720 - PGA1_c07860 0.33 +1.1
814,752 + PGA1_c07860 0.36 +2.4
814,760 - PGA1_c07860 0.36 +1.4
814,838 - PGA1_c07860 0.42 +2.0
814,861 + PGA1_c07860 0.44 +2.1
814,885 + PGA1_c07860 0.46 +0.7
814,940 + PGA1_c07860 0.50 +2.4
814,964 + PGA1_c07860 0.52 +1.6
814,964 + PGA1_c07860 0.52 +1.7
814,964 + PGA1_c07860 0.52 +1.6
814,964 + PGA1_c07860 0.52 +1.5
814,964 + PGA1_c07860 0.52 +1.6
814,964 + PGA1_c07860 0.52 +1.7
814,972 - PGA1_c07860 0.52 +2.0
814,972 - PGA1_c07860 0.52 +1.8
814,972 - PGA1_c07860 0.52 +2.2
814,972 - PGA1_c07860 0.52 +0.1
814,972 - PGA1_c07860 0.52 +2.3
815,036 + PGA1_c07860 0.57 +2.0
815,123 + PGA1_c07860 0.63 +1.6
815,126 + PGA1_c07860 0.63 +1.7
815,131 - PGA1_c07860 0.64 +2.6
815,166 + PGA1_c07860 0.66 +1.9
815,204 + PGA1_c07860 0.69 +2.0
815,260 + PGA1_c07860 0.73 +2.0
815,270 + PGA1_c07860 0.74 +1.6
815,270 + PGA1_c07860 0.74 +1.6
815,278 - PGA1_c07860 0.75 +2.3
815,278 - PGA1_c07860 0.75 +1.8
815,293 - PGA1_c07860 0.76 +1.9
815,293 - PGA1_c07860 0.76 +1.5
815,370 - PGA1_c07860 0.82 +2.5
815,380 + PGA1_c07860 0.82 +2.3
815,398 + PGA1_c07860 0.84 +1.6
815,407 + PGA1_c07860 0.84 +0.7
815,408 - PGA1_c07860 0.84 -0.2
815,429 + PGA1_c07860 0.86 +1.4
815,468 + PGA1_c07860 0.89 +1.8
815,470 + PGA1_c07860 0.89 +2.0
815,492 + +2.3
815,500 - +2.1
815,537 - +2.6
815,577 + +1.3
815,613 + +1.7
815,622 - +1.1
815,639 - +2.6
815,710 - +1.5
815,717 + +0.7
815,719 + +2.0
815,798 - +1.7
815,800 + +2.0
815,819 - +1.7
815,867 - +2.1
815,930 - PGA1_c07870 0.15 +2.0
815,964 + PGA1_c07870 0.19 +1.7
815,988 - PGA1_c07870 0.21 +1.6
815,993 - PGA1_c07870 0.21 +1.9
816,025 + PGA1_c07870 0.25 +1.7
816,033 - PGA1_c07870 0.25 +1.2
816,153 + PGA1_c07870 0.37 +1.5
816,161 - PGA1_c07870 0.38 +1.9
816,168 + PGA1_c07870 0.39 +2.2
816,168 + PGA1_c07870 0.39 +2.2
816,176 - PGA1_c07870 0.40 +1.9
816,311 + PGA1_c07870 0.53 +1.8
816,356 - PGA1_c07870 0.57 +0.4
816,401 + PGA1_c07870 0.62 +2.0
816,431 - PGA1_c07870 0.65 +1.7
816,452 - PGA1_c07870 0.67 +1.9
816,452 - PGA1_c07870 0.67 +2.2
816,499 + PGA1_c07870 0.72 +1.9
816,579 + PGA1_c07870 0.80 +2.2
816,580 - PGA1_c07870 0.80 +2.0
816,614 + PGA1_c07870 0.83 +2.0
816,619 + PGA1_c07870 0.84 +3.1

Or see this region's nucleotide sequence