Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14740

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14730 and PGA1_c14740 are separated by 205 nucleotidesPGA1_c14740 and PGA1_c14750 are separated by 2 nucleotidesPGA1_c14750 and PGA1_c14760 overlap by 4 nucleotides PGA1_c14730: PGA1_c14730 - ammonia channel, at 1,526,087 to 1,527,268 _c14730 PGA1_c14740: PGA1_c14740 - competence/damage-inducible protein CinA C-terminal domain, at 1,527,474 to 1,527,956 _c14740 PGA1_c14750: PGA1_c14750 - phosphatidylglycerophosphatase, at 1,527,959 to 1,528,465 _c14750 PGA1_c14760: PGA1_c14760 - bifunctional enzyme IspDF, at 1,528,462 to 1,529,682 _c14760 Position (kb) 1527 1528Strain fitness (log2 ratio) -2 -1 0 1at 1526.494 kb on + strand, within PGA1_c14730at 1526.538 kb on - strand, within PGA1_c14730at 1526.568 kb on - strand, within PGA1_c14730at 1526.597 kb on - strand, within PGA1_c14730at 1526.635 kb on + strand, within PGA1_c14730at 1526.640 kb on + strand, within PGA1_c14730at 1526.645 kb on + strand, within PGA1_c14730at 1526.648 kb on - strand, within PGA1_c14730at 1526.648 kb on - strand, within PGA1_c14730at 1526.648 kb on - strand, within PGA1_c14730at 1526.710 kb on + strand, within PGA1_c14730at 1526.710 kb on + strand, within PGA1_c14730at 1526.710 kb on + strand, within PGA1_c14730at 1526.710 kb on + strand, within PGA1_c14730at 1526.861 kb on + strand, within PGA1_c14730at 1526.861 kb on + strand, within PGA1_c14730at 1526.866 kb on + strand, within PGA1_c14730at 1526.867 kb on - strand, within PGA1_c14730at 1526.869 kb on - strand, within PGA1_c14730at 1526.925 kb on - strand, within PGA1_c14730at 1526.938 kb on + strand, within PGA1_c14730at 1526.941 kb on - strand, within PGA1_c14730at 1526.946 kb on - strand, within PGA1_c14730at 1526.978 kb on + strand, within PGA1_c14730at 1526.985 kb on + strand, within PGA1_c14730at 1526.997 kb on + strand, within PGA1_c14730at 1527.019 kb on - strand, within PGA1_c14730at 1527.049 kb on - strand, within PGA1_c14730at 1527.058 kb on + strand, within PGA1_c14730at 1527.058 kb on + strand, within PGA1_c14730at 1527.132 kb on + strand, within PGA1_c14730at 1527.137 kb on + strand, within PGA1_c14730at 1527.145 kb on - strand, within PGA1_c14730at 1527.180 kb on - strandat 1527.183 kb on + strandat 1527.183 kb on + strandat 1527.183 kb on + strandat 1527.183 kb on + strandat 1527.191 kb on - strandat 1527.201 kb on - strandat 1527.215 kb on + strandat 1527.221 kb on + strandat 1527.312 kb on - strandat 1527.318 kb on + strandat 1527.323 kb on + strandat 1527.331 kb on - strandat 1527.331 kb on - strandat 1527.351 kb on + strandat 1527.459 kb on + strandat 1527.467 kb on - strandat 1527.526 kb on - strand, within PGA1_c14740at 1527.602 kb on + strand, within PGA1_c14740at 1527.611 kb on + strand, within PGA1_c14740at 1527.611 kb on + strand, within PGA1_c14740at 1527.619 kb on - strand, within PGA1_c14740at 1527.619 kb on - strand, within PGA1_c14740at 1527.641 kb on + strand, within PGA1_c14740at 1527.651 kb on + strand, within PGA1_c14740at 1527.687 kb on + strand, within PGA1_c14740at 1527.820 kb on - strand, within PGA1_c14740at 1527.830 kb on - strand, within PGA1_c14740at 1527.835 kb on + strand, within PGA1_c14740at 1527.862 kb on - strand, within PGA1_c14740at 1527.928 kb on + strandat 1527.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,526,494 + PGA1_c14730 0.34 -0.0
1,526,538 - PGA1_c14730 0.38 -0.7
1,526,568 - PGA1_c14730 0.41 +1.0
1,526,597 - PGA1_c14730 0.43 -0.2
1,526,635 + PGA1_c14730 0.46 -0.9
1,526,640 + PGA1_c14730 0.47 -0.1
1,526,645 + PGA1_c14730 0.47 +0.0
1,526,648 - PGA1_c14730 0.47 +0.0
1,526,648 - PGA1_c14730 0.47 +0.8
1,526,648 - PGA1_c14730 0.47 -0.2
1,526,710 + PGA1_c14730 0.53 +0.8
1,526,710 + PGA1_c14730 0.53 -0.6
1,526,710 + PGA1_c14730 0.53 -0.7
1,526,710 + PGA1_c14730 0.53 +0.5
1,526,861 + PGA1_c14730 0.65 +0.1
1,526,861 + PGA1_c14730 0.65 -0.3
1,526,866 + PGA1_c14730 0.66 -0.7
1,526,867 - PGA1_c14730 0.66 -1.1
1,526,869 - PGA1_c14730 0.66 -0.1
1,526,925 - PGA1_c14730 0.71 -1.1
1,526,938 + PGA1_c14730 0.72 -1.5
1,526,941 - PGA1_c14730 0.72 +0.5
1,526,946 - PGA1_c14730 0.73 +0.7
1,526,978 + PGA1_c14730 0.75 +0.8
1,526,985 + PGA1_c14730 0.76 -0.4
1,526,997 + PGA1_c14730 0.77 -0.5
1,527,019 - PGA1_c14730 0.79 +0.2
1,527,049 - PGA1_c14730 0.81 +0.9
1,527,058 + PGA1_c14730 0.82 +0.3
1,527,058 + PGA1_c14730 0.82 -0.9
1,527,132 + PGA1_c14730 0.88 -0.4
1,527,137 + PGA1_c14730 0.89 +0.5
1,527,145 - PGA1_c14730 0.90 -0.2
1,527,180 - -0.3
1,527,183 + +0.3
1,527,183 + +1.6
1,527,183 + -0.0
1,527,183 + -1.3
1,527,191 - -0.2
1,527,201 - +0.7
1,527,215 + -0.3
1,527,221 + +0.3
1,527,312 - -0.3
1,527,318 + -0.3
1,527,323 + -0.2
1,527,331 - +0.3
1,527,331 - -0.0
1,527,351 + +0.3
1,527,459 + -0.4
1,527,467 - -0.1
1,527,526 - PGA1_c14740 0.11 +1.3
1,527,602 + PGA1_c14740 0.27 -0.2
1,527,611 + PGA1_c14740 0.28 -1.1
1,527,611 + PGA1_c14740 0.28 -0.6
1,527,619 - PGA1_c14740 0.30 -0.9
1,527,619 - PGA1_c14740 0.30 -0.2
1,527,641 + PGA1_c14740 0.35 -1.2
1,527,651 + PGA1_c14740 0.37 +0.5
1,527,687 + PGA1_c14740 0.44 -0.4
1,527,820 - PGA1_c14740 0.72 -0.5
1,527,830 - PGA1_c14740 0.74 -0.4
1,527,835 + PGA1_c14740 0.75 -2.4
1,527,862 - PGA1_c14740 0.80 -1.1
1,527,928 + +0.5
1,527,944 - -0.1

Or see this region's nucleotide sequence