Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27440 and BWI76_RS27445 are separated by 53 nucleotides BWI76_RS27445 and BWI76_RS27450 are separated by 95 nucleotides BWI76_RS27450 and BWI76_RS27455 are separated by 0 nucleotides
BWI76_RS27440: BWI76_RS27440 - DNA helicase RecG, at 5,692,764 to 5,694,845
_RS27440
BWI76_RS27445: BWI76_RS27445 - fructose-bisphosphatase class II, at 5,694,899 to 5,695,909
_RS27445
BWI76_RS27450: BWI76_RS27450 - ferredoxin--NADP(+) reductase, at 5,696,005 to 5,696,751
_RS27450
BWI76_RS27455: BWI76_RS27455 - DUF805 domain-containing protein, at 5,696,752 to 5,697,180
_RS27455
Position (kb) 5694
5695
5696 Strain fitness (log2 ratio) -2
-1
0
1 at 5694.031 kb on + strand, within BWI76_RS27440 at 5694.301 kb on - strand, within BWI76_RS27440 at 5694.338 kb on - strand, within BWI76_RS27440 at 5694.430 kb on + strand, within BWI76_RS27440 at 5695.104 kb on - strand, within BWI76_RS27445 at 5695.475 kb on + strand, within BWI76_RS27445 at 5695.553 kb on + strand, within BWI76_RS27445 at 5695.771 kb on + strand, within BWI76_RS27445 at 5695.880 kb on + strand at 5696.061 kb on + strand at 5696.392 kb on + strand, within BWI76_RS27450 at 5696.400 kb on - strand, within BWI76_RS27450 at 5696.429 kb on - strand, within BWI76_RS27450 at 5696.497 kb on - strand, within BWI76_RS27450 at 5696.627 kb on + strand, within BWI76_RS27450 at 5696.637 kb on - strand, within BWI76_RS27450 at 5696.864 kb on + strand, within BWI76_RS27455
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,694,031 + BWI76_RS27440 0.61 -2.1 5,694,301 - BWI76_RS27440 0.74 +1.0 5,694,338 - BWI76_RS27440 0.76 -0.5 5,694,430 + BWI76_RS27440 0.80 -2.1 5,695,104 - BWI76_RS27445 0.20 -0.8 5,695,475 + BWI76_RS27445 0.57 -0.9 5,695,553 + BWI76_RS27445 0.65 -0.0 5,695,771 + BWI76_RS27445 0.86 -1.3 5,695,880 + +0.6 5,696,061 + +0.2 5,696,392 + BWI76_RS27450 0.52 -0.8 5,696,400 - BWI76_RS27450 0.53 +1.0 5,696,429 - BWI76_RS27450 0.57 -0.0 5,696,497 - BWI76_RS27450 0.66 +0.1 5,696,627 + BWI76_RS27450 0.83 +0.2 5,696,637 - BWI76_RS27450 0.85 -0.1 5,696,864 + BWI76_RS27455 0.26 +0.4
Or see this region's nucleotide sequence