Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27045 and BWI76_RS27050 are separated by 60 nucleotides BWI76_RS27050 and BWI76_RS27055 overlap by 59 nucleotides BWI76_RS27055 and BWI76_RS27060 are separated by 80 nucleotides
BWI76_RS27045: BWI76_RS27045 - XylR family transcriptional regulator, at 5,612,077 to 5,613,255
_RS27045
BWI76_RS27050: BWI76_RS27050 - hypothetical protein, at 5,613,316 to 5,614,143
_RS27050
BWI76_RS27055: BWI76_RS27055 - hypothetical protein, at 5,614,085 to 5,614,378
_RS27055
BWI76_RS27060: BWI76_RS27060 - alpha-amylase, at 5,614,459 to 5,616,492
_RS27060
Position (kb) 5613
5614
5615 Strain fitness (log2 ratio) -1
0
1 at 5612.394 kb on + strand, within BWI76_RS27045 at 5612.743 kb on - strand, within BWI76_RS27045 at 5612.743 kb on - strand, within BWI76_RS27045 at 5612.772 kb on + strand, within BWI76_RS27045 at 5612.780 kb on - strand, within BWI76_RS27045 at 5612.906 kb on - strand, within BWI76_RS27045 at 5612.954 kb on + strand, within BWI76_RS27045 at 5612.979 kb on + strand, within BWI76_RS27045 at 5612.986 kb on - strand, within BWI76_RS27045 at 5613.212 kb on + strand at 5613.214 kb on - strand at 5613.378 kb on + strand at 5613.454 kb on - strand, within BWI76_RS27050 at 5613.679 kb on - strand, within BWI76_RS27050 at 5613.698 kb on + strand, within BWI76_RS27050 at 5613.874 kb on + strand, within BWI76_RS27050 at 5613.877 kb on - strand, within BWI76_RS27050 at 5614.122 kb on - strand at 5614.385 kb on - strand at 5614.449 kb on + strand at 5614.500 kb on + strand at 5614.500 kb on + strand at 5614.657 kb on - strand at 5614.657 kb on - strand at 5614.672 kb on - strand, within BWI76_RS27060 at 5614.675 kb on - strand, within BWI76_RS27060 at 5614.762 kb on - strand, within BWI76_RS27060 at 5614.850 kb on + strand, within BWI76_RS27060 at 5614.858 kb on - strand, within BWI76_RS27060 at 5615.031 kb on + strand, within BWI76_RS27060
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,612,394 + BWI76_RS27045 0.27 -0.1 5,612,743 - BWI76_RS27045 0.56 -0.1 5,612,743 - BWI76_RS27045 0.56 -0.6 5,612,772 + BWI76_RS27045 0.59 -0.6 5,612,780 - BWI76_RS27045 0.60 +1.0 5,612,906 - BWI76_RS27045 0.70 +0.3 5,612,954 + BWI76_RS27045 0.74 -0.0 5,612,979 + BWI76_RS27045 0.77 +0.2 5,612,986 - BWI76_RS27045 0.77 +0.2 5,613,212 + +0.4 5,613,214 - +0.6 5,613,378 + +0.2 5,613,454 - BWI76_RS27050 0.17 +0.7 5,613,679 - BWI76_RS27050 0.44 +0.2 5,613,698 + BWI76_RS27050 0.46 -0.2 5,613,874 + BWI76_RS27050 0.67 +0.5 5,613,877 - BWI76_RS27050 0.68 +0.6 5,614,122 - -0.3 5,614,385 - -1.5 5,614,449 + -0.2 5,614,500 + -0.4 5,614,500 + -0.7 5,614,657 - -0.6 5,614,657 - +0.4 5,614,672 - BWI76_RS27060 0.10 -0.1 5,614,675 - BWI76_RS27060 0.11 -0.7 5,614,762 - BWI76_RS27060 0.15 +0.3 5,614,850 + BWI76_RS27060 0.19 +0.0 5,614,858 - BWI76_RS27060 0.20 -0.1 5,615,031 + BWI76_RS27060 0.28 +0.9
Or see this region's nucleotide sequence