Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24875 and BWI76_RS24880 are separated by 13 nucleotides BWI76_RS24880 and BWI76_RS24885 are separated by 26 nucleotides BWI76_RS24885 and BWI76_RS24890 are separated by 5 nucleotides BWI76_RS24890 and BWI76_RS24895 are separated by 45 nucleotides
BWI76_RS24875: BWI76_RS24875 - tagatose-1,6-bisphosphate aldolase, at 5,184,025 to 5,185,296
_RS24875
BWI76_RS24880: BWI76_RS24880 - PTS galactitol transporter subunit IIA, at 5,185,310 to 5,185,777
_RS24880
BWI76_RS24885: BWI76_RS24885 - PTS galactitol transporter subunit IIB, at 5,185,804 to 5,186,088
_RS24885
BWI76_RS24890: BWI76_RS24890 - PTS system galactitol-specific transporter subunit IIC, at 5,186,094 to 5,187,467
_RS24890
BWI76_RS24895: BWI76_RS24895 - galactitol-1-phosphate 5-dehydrogenase, at 5,187,513 to 5,188,556
_RS24895
Position (kb) 5186
5187
5188 Strain fitness (log2 ratio) -2
-1
0
1 at 5185.167 kb on + strand, within BWI76_RS24875 at 5185.167 kb on + strand, within BWI76_RS24875 at 5185.167 kb on + strand, within BWI76_RS24875 at 5185.167 kb on + strand, within BWI76_RS24875 at 5185.175 kb on - strand at 5185.175 kb on - strand at 5185.175 kb on - strand at 5185.175 kb on - strand at 5185.242 kb on + strand at 5185.267 kb on + strand at 5185.437 kb on - strand, within BWI76_RS24880 at 5185.495 kb on + strand, within BWI76_RS24880 at 5185.495 kb on - strand, within BWI76_RS24880 at 5185.644 kb on - strand, within BWI76_RS24880 at 5185.837 kb on - strand, within BWI76_RS24885 at 5185.965 kb on - strand, within BWI76_RS24885 at 5185.991 kb on + strand, within BWI76_RS24885 at 5186.091 kb on + strand at 5186.200 kb on + strand at 5186.200 kb on + strand at 5186.349 kb on - strand, within BWI76_RS24890 at 5186.355 kb on + strand, within BWI76_RS24890 at 5186.496 kb on + strand, within BWI76_RS24890 at 5186.795 kb on - strand, within BWI76_RS24890 at 5186.815 kb on - strand, within BWI76_RS24890 at 5186.865 kb on - strand, within BWI76_RS24890 at 5187.146 kb on - strand, within BWI76_RS24890 at 5187.150 kb on - strand, within BWI76_RS24890 at 5187.205 kb on - strand, within BWI76_RS24890 at 5187.219 kb on + strand, within BWI76_RS24890 at 5187.285 kb on + strand, within BWI76_RS24890 at 5187.285 kb on + strand, within BWI76_RS24890 at 5187.323 kb on + strand, within BWI76_RS24890 at 5187.348 kb on - strand at 5187.368 kb on + strand at 5187.476 kb on - strand at 5187.530 kb on - strand at 5187.530 kb on - strand at 5187.621 kb on - strand, within BWI76_RS24895 at 5187.899 kb on - strand, within BWI76_RS24895 at 5188.147 kb on + strand, within BWI76_RS24895 at 5188.147 kb on + strand, within BWI76_RS24895 at 5188.286 kb on + strand, within BWI76_RS24895 at 5188.324 kb on - strand, within BWI76_RS24895 at 5188.389 kb on - strand, within BWI76_RS24895
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,185,167 + BWI76_RS24875 0.90 -1.4 5,185,167 + BWI76_RS24875 0.90 -2.4 5,185,167 + BWI76_RS24875 0.90 -0.6 5,185,167 + BWI76_RS24875 0.90 +0.2 5,185,175 - -0.3 5,185,175 - +0.1 5,185,175 - +0.4 5,185,175 - +0.1 5,185,242 + -0.1 5,185,267 + -0.1 5,185,437 - BWI76_RS24880 0.27 -0.6 5,185,495 + BWI76_RS24880 0.40 -0.6 5,185,495 - BWI76_RS24880 0.40 +1.1 5,185,644 - BWI76_RS24880 0.71 -0.5 5,185,837 - BWI76_RS24885 0.12 +0.4 5,185,965 - BWI76_RS24885 0.56 +0.2 5,185,991 + BWI76_RS24885 0.66 +1.0 5,186,091 + +0.5 5,186,200 + +0.1 5,186,200 + -0.2 5,186,349 - BWI76_RS24890 0.19 +0.8 5,186,355 + BWI76_RS24890 0.19 +0.3 5,186,496 + BWI76_RS24890 0.29 +0.5 5,186,795 - BWI76_RS24890 0.51 +0.0 5,186,815 - BWI76_RS24890 0.52 -0.1 5,186,865 - BWI76_RS24890 0.56 +0.3 5,187,146 - BWI76_RS24890 0.77 +0.1 5,187,150 - BWI76_RS24890 0.77 +0.1 5,187,205 - BWI76_RS24890 0.81 +0.5 5,187,219 + BWI76_RS24890 0.82 +0.9 5,187,285 + BWI76_RS24890 0.87 +0.7 5,187,285 + BWI76_RS24890 0.87 +0.4 5,187,323 + BWI76_RS24890 0.89 +0.4 5,187,348 - -0.1 5,187,368 + -0.5 5,187,476 - -0.3 5,187,530 - -0.5 5,187,530 - -0.6 5,187,621 - BWI76_RS24895 0.10 -0.3 5,187,899 - BWI76_RS24895 0.37 +0.4 5,188,147 + BWI76_RS24895 0.61 +0.2 5,188,147 + BWI76_RS24895 0.61 +0.6 5,188,286 + BWI76_RS24895 0.74 -0.6 5,188,324 - BWI76_RS24895 0.78 -0.4 5,188,389 - BWI76_RS24895 0.84 -1.0
Or see this region's nucleotide sequence