Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16130

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16120 and BWI76_RS16125 overlap by 11 nucleotidesBWI76_RS16125 and BWI76_RS16130 overlap by 11 nucleotidesBWI76_RS16130 and BWI76_RS16135 are separated by 9 nucleotides BWI76_RS16120: BWI76_RS16120 - 4-carboxymuconolactone decarboxylase, at 3,345,258 to 3,345,641 _RS16120 BWI76_RS16125: BWI76_RS16125 - 3-oxoadipate enol-lactonase, at 3,345,631 to 3,346,398 _RS16125 BWI76_RS16130: BWI76_RS16130 - 3-carboxy-cis,cis-muconate cycloisomerase, at 3,346,388 to 3,347,740 _RS16130 BWI76_RS16135: BWI76_RS16135 - acetyl-CoA acetyltransferase, at 3,347,750 to 3,348,952 _RS16135 Position (kb) 3346 3347 3348Strain fitness (log2 ratio) -1 0 1at 3345.392 kb on - strand, within BWI76_RS16120at 3345.440 kb on + strand, within BWI76_RS16120at 3345.585 kb on + strand, within BWI76_RS16120at 3345.593 kb on - strand, within BWI76_RS16120at 3345.654 kb on + strandat 3345.903 kb on + strand, within BWI76_RS16125at 3346.488 kb on - strandat 3346.494 kb on + strandat 3346.851 kb on + strand, within BWI76_RS16130at 3347.026 kb on - strand, within BWI76_RS16130at 3347.070 kb on - strand, within BWI76_RS16130at 3347.259 kb on - strand, within BWI76_RS16130at 3347.785 kb on - strandat 3347.918 kb on + strand, within BWI76_RS16135at 3347.941 kb on + strand, within BWI76_RS16135at 3347.949 kb on - strand, within BWI76_RS16135at 3348.604 kb on - strand, within BWI76_RS16135

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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3,345,392 - BWI76_RS16120 0.35 -0.2
3,345,440 + BWI76_RS16120 0.47 +0.0
3,345,585 + BWI76_RS16120 0.85 -0.3
3,345,593 - BWI76_RS16120 0.87 -1.5
3,345,654 + -0.6
3,345,903 + BWI76_RS16125 0.35 -0.0
3,346,488 - +0.2
3,346,494 + +0.1
3,346,851 + BWI76_RS16130 0.34 +0.1
3,347,026 - BWI76_RS16130 0.47 +1.0
3,347,070 - BWI76_RS16130 0.50 +0.0
3,347,259 - BWI76_RS16130 0.64 +0.5
3,347,785 - +0.3
3,347,918 + BWI76_RS16135 0.14 +0.1
3,347,941 + BWI76_RS16135 0.16 -0.2
3,347,949 - BWI76_RS16135 0.17 -0.0
3,348,604 - BWI76_RS16135 0.71 -0.0

Or see this region's nucleotide sequence