Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15275 and BWI76_RS15280 are separated by 204 nucleotides BWI76_RS15280 and BWI76_RS15285 are separated by 73 nucleotides
BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829
_RS15275
BWI76_RS15280: BWI76_RS15280 - sugar transporter, at 3,202,034 to 3,203,233
_RS15280
BWI76_RS15285: BWI76_RS15285 - stress protection protein MarC, at 3,203,307 to 3,203,975
_RS15285
Position (kb)
3202
3203
3204 Strain fitness (log2 ratio)
-2
-1
0
1 at 3201.277 kb on - strand, within BWI76_RS15275 at 3201.401 kb on - strand, within BWI76_RS15275 at 3201.406 kb on - strand, within BWI76_RS15275 at 3201.664 kb on + strand, within BWI76_RS15275 at 3201.839 kb on - strand at 3201.924 kb on + strand at 3202.023 kb on + strand at 3202.138 kb on + strand at 3202.233 kb on + strand, within BWI76_RS15280 at 3202.605 kb on - strand, within BWI76_RS15280 at 3202.883 kb on + strand, within BWI76_RS15280 at 3203.038 kb on + strand, within BWI76_RS15280 at 3203.159 kb on + strand at 3203.446 kb on - strand, within BWI76_RS15285 at 3203.473 kb on - strand, within BWI76_RS15285 at 3203.478 kb on - strand, within BWI76_RS15285 at 3203.863 kb on + strand, within BWI76_RS15285 at 3203.942 kb on + strand at 3203.950 kb on - strand at 3204.060 kb on - strand at 3204.104 kb on + strand at 3204.104 kb on + strand at 3204.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 3,201,277 - BWI76_RS15275 0.30 -0.7 3,201,401 - BWI76_RS15275 0.46 +0.4 3,201,406 - BWI76_RS15275 0.46 +0.8 3,201,664 + BWI76_RS15275 0.79 -0.1 3,201,839 - +0.4 3,201,924 + -1.9 3,202,023 + -0.6 3,202,138 + -0.6 3,202,233 + BWI76_RS15280 0.17 -0.8 3,202,605 - BWI76_RS15280 0.48 +0.6 3,202,883 + BWI76_RS15280 0.71 +0.4 3,203,038 + BWI76_RS15280 0.84 +0.8 3,203,159 + +0.4 3,203,446 - BWI76_RS15285 0.21 +0.9 3,203,473 - BWI76_RS15285 0.25 -0.0 3,203,478 - BWI76_RS15285 0.26 +0.4 3,203,863 + BWI76_RS15285 0.83 -0.0 3,203,942 + -0.0 3,203,950 - -0.1 3,204,060 - -0.0 3,204,104 + +0.7 3,204,104 + +0.1 3,204,122 - -0.1
Or see this region's nucleotide sequence