Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14835 and BWI76_RS14840 are separated by 180 nucleotides BWI76_RS14840 and BWI76_RS14845 are separated by 208 nucleotides BWI76_RS14845 and BWI76_RS14850 are separated by 366 nucleotides
BWI76_RS14835: BWI76_RS14835 - hypothetical protein, at 3,108,038 to 3,108,430
_RS14835
BWI76_RS14840: BWI76_RS14840 - hypothetical protein, at 3,108,611 to 3,109,213
_RS14840
BWI76_RS14845: BWI76_RS14845 - hypothetical protein, at 3,109,422 to 3,110,048
_RS14845
BWI76_RS14850: BWI76_RS14850 - LacI family transcriptional regulator, at 3,110,415 to 3,111,446
_RS14850
Position (kb)
3109
3110
3111 Strain fitness (log2 ratio)
-1
0
1 at 3108.425 kb on + strand at 3108.594 kb on - strand at 3108.726 kb on - strand, within BWI76_RS14840 at 3108.847 kb on - strand, within BWI76_RS14840 at 3109.135 kb on + strand, within BWI76_RS14840 at 3109.175 kb on - strand at 3109.240 kb on + strand at 3109.361 kb on - strand at 3109.674 kb on - strand, within BWI76_RS14845 at 3109.679 kb on - strand, within BWI76_RS14845 at 3109.803 kb on - strand, within BWI76_RS14845 at 3110.173 kb on - strand at 3110.219 kb on + strand at 3110.219 kb on + strand at 3110.219 kb on + strand at 3110.826 kb on - strand, within BWI76_RS14850 at 3110.991 kb on - strand, within BWI76_RS14850 at 3111.013 kb on - strand, within BWI76_RS14850
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 3,108,425 + +0.4 3,108,594 - +0.2 3,108,726 - BWI76_RS14840 0.19 -0.7 3,108,847 - BWI76_RS14840 0.39 -0.1 3,109,135 + BWI76_RS14840 0.87 -0.2 3,109,175 - -0.3 3,109,240 + +0.9 3,109,361 - -0.3 3,109,674 - BWI76_RS14845 0.40 +0.7 3,109,679 - BWI76_RS14845 0.41 +0.1 3,109,803 - BWI76_RS14845 0.61 +0.6 3,110,173 - -0.6 3,110,219 + -0.4 3,110,219 + +0.2 3,110,219 + +0.2 3,110,826 - BWI76_RS14850 0.40 -0.5 3,110,991 - BWI76_RS14850 0.56 -0.2 3,111,013 - BWI76_RS14850 0.58 -0.5
Or see this region's nucleotide sequence