Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14080 and BWI76_RS14085 are separated by 16 nucleotides BWI76_RS14085 and BWI76_RS14090 are separated by 123 nucleotides BWI76_RS14090 and BWI76_RS14095 are separated by 30 nucleotides
BWI76_RS14080: BWI76_RS14080 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,941,617 to 2,944,724
_RS14080
BWI76_RS14085: BWI76_RS14085 - hypothetical protein, at 2,944,741 to 2,945,163
_RS14085
BWI76_RS14090: BWI76_RS14090 - polyketide cyclase, at 2,945,287 to 2,945,740
_RS14090
BWI76_RS14095: BWI76_RS14095 - hypothetical protein, at 2,945,771 to 2,947,096
_RS14095
Position (kb)
2945
2946 Strain fitness (log2 ratio)
-1
0
1 at 2944.337 kb on + strand, within BWI76_RS14080 at 2944.510 kb on + strand at 2944.734 kb on + strand at 2945.332 kb on + strand at 2945.407 kb on - strand, within BWI76_RS14090 at 2945.451 kb on - strand, within BWI76_RS14090 at 2945.573 kb on - strand, within BWI76_RS14090 at 2945.963 kb on + strand, within BWI76_RS14095 at 2945.963 kb on + strand, within BWI76_RS14095 at 2945.979 kb on + strand, within BWI76_RS14095 at 2945.997 kb on - strand, within BWI76_RS14095 at 2946.465 kb on - strand, within BWI76_RS14095 at 2946.465 kb on - strand, within BWI76_RS14095 at 2946.503 kb on + strand, within BWI76_RS14095 at 2946.550 kb on + strand, within BWI76_RS14095 at 2946.606 kb on + strand, within BWI76_RS14095 at 2946.663 kb on - strand, within BWI76_RS14095
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,944,337 + BWI76_RS14080 0.88 +0.3 2,944,510 + -0.3 2,944,734 + +1.2 2,945,332 + -0.2 2,945,407 - BWI76_RS14090 0.26 +0.7 2,945,451 - BWI76_RS14090 0.36 +0.4 2,945,573 - BWI76_RS14090 0.63 +0.0 2,945,963 + BWI76_RS14095 0.14 -0.2 2,945,963 + BWI76_RS14095 0.14 -0.1 2,945,979 + BWI76_RS14095 0.16 -0.2 2,945,997 - BWI76_RS14095 0.17 -0.4 2,946,465 - BWI76_RS14095 0.52 +0.0 2,946,465 - BWI76_RS14095 0.52 +0.4 2,946,503 + BWI76_RS14095 0.55 -1.0 2,946,550 + BWI76_RS14095 0.59 -0.2 2,946,606 + BWI76_RS14095 0.63 -0.3 2,946,663 - BWI76_RS14095 0.67 -0.4
Or see this region's nucleotide sequence