Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13885 and BWI76_RS13890 are separated by 157 nucleotides BWI76_RS13890 and BWI76_RS13895 overlap by 32 nucleotides BWI76_RS13895 and BWI76_RS13900 are separated by 104 nucleotides
BWI76_RS13885: BWI76_RS13885 - AraC family transcriptional regulator, at 2,896,677 to 2,897,489
_RS13885
BWI76_RS13890: BWI76_RS13890 - LysR family transcriptional regulator, at 2,897,647 to 2,898,552
_RS13890
BWI76_RS13895: BWI76_RS13895 - LysR family transcriptional regulator, at 2,898,521 to 2,899,426
_RS13895
BWI76_RS13900: BWI76_RS13900 - MFS transporter, at 2,899,531 to 2,900,694
_RS13900
Position (kb)
2897
2898
2899 Strain fitness (log2 ratio)
-1
0
1 at 2896.708 kb on - strand at 2897.141 kb on + strand, within BWI76_RS13885 at 2897.906 kb on + strand, within BWI76_RS13890 at 2898.014 kb on - strand, within BWI76_RS13890 at 2898.036 kb on + strand, within BWI76_RS13890 at 2898.817 kb on - strand, within BWI76_RS13895 at 2899.146 kb on - strand, within BWI76_RS13895 at 2899.417 kb on - strand at 2899.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,896,708 - +0.1 2,897,141 + BWI76_RS13885 0.57 +0.5 2,897,906 + BWI76_RS13890 0.29 -0.3 2,898,014 - BWI76_RS13890 0.41 +1.6 2,898,036 + BWI76_RS13890 0.43 -0.1 2,898,817 - BWI76_RS13895 0.33 -0.7 2,899,146 - BWI76_RS13895 0.69 -0.2 2,899,417 - +0.3 2,899,493 + +0.3
Or see this region's nucleotide sequence