Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08870 and BWI76_RS08875 overlap by 11 nucleotides BWI76_RS08875 and BWI76_RS08880 overlap by 4 nucleotides BWI76_RS08880 and BWI76_RS08885 overlap by 4 nucleotides
BWI76_RS08870: BWI76_RS08870 - inner membrane transport permease YbhS, at 1,866,861 to 1,867,994
_RS08870
BWI76_RS08875: BWI76_RS08875 - multidrug ABC transporter ATP-binding protein, at 1,867,984 to 1,869,723
_RS08875
BWI76_RS08880: BWI76_RS08880 - secretion protein HlyD, at 1,869,720 to 1,870,712
_RS08880
BWI76_RS08885: BWI76_RS08885 - transcriptional regulator, at 1,870,709 to 1,871,386
_RS08885
Position (kb)
1867
1868
1869
1870 Strain fitness (log2 ratio)
-1
0
1
2 at 1867.120 kb on + strand, within BWI76_RS08870 at 1867.171 kb on - strand, within BWI76_RS08870 at 1867.263 kb on + strand, within BWI76_RS08870 at 1867.263 kb on - strand, within BWI76_RS08870 at 1867.395 kb on + strand, within BWI76_RS08870 at 1867.403 kb on - strand, within BWI76_RS08870 at 1867.480 kb on - strand, within BWI76_RS08870 at 1867.575 kb on + strand, within BWI76_RS08870 at 1867.883 kb on + strand at 1868.136 kb on - strand at 1868.195 kb on + strand, within BWI76_RS08875 at 1868.333 kb on - strand, within BWI76_RS08875 at 1868.358 kb on + strand, within BWI76_RS08875 at 1869.068 kb on + strand, within BWI76_RS08875 at 1869.107 kb on + strand, within BWI76_RS08875 at 1869.140 kb on - strand, within BWI76_RS08875 at 1869.269 kb on + strand, within BWI76_RS08875 at 1869.400 kb on + strand, within BWI76_RS08875 at 1869.443 kb on + strand, within BWI76_RS08875 at 1869.475 kb on + strand, within BWI76_RS08875 at 1869.536 kb on - strand, within BWI76_RS08875 at 1869.901 kb on + strand, within BWI76_RS08880 at 1870.125 kb on - strand, within BWI76_RS08880 at 1870.211 kb on + strand, within BWI76_RS08880 at 1870.218 kb on - strand, within BWI76_RS08880 at 1870.349 kb on - strand, within BWI76_RS08880 at 1870.413 kb on + strand, within BWI76_RS08880 at 1870.610 kb on - strand, within BWI76_RS08880 at 1870.685 kb on + strand at 1870.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,867,120 + BWI76_RS08870 0.23 +0.6 1,867,171 - BWI76_RS08870 0.27 +0.6 1,867,263 + BWI76_RS08870 0.35 +0.6 1,867,263 - BWI76_RS08870 0.35 +0.3 1,867,395 + BWI76_RS08870 0.47 -0.1 1,867,403 - BWI76_RS08870 0.48 +0.4 1,867,480 - BWI76_RS08870 0.55 +0.2 1,867,575 + BWI76_RS08870 0.63 +0.3 1,867,883 + +0.4 1,868,136 - +0.0 1,868,195 + BWI76_RS08875 0.12 +0.3 1,868,333 - BWI76_RS08875 0.20 +0.3 1,868,358 + BWI76_RS08875 0.21 +0.6 1,869,068 + BWI76_RS08875 0.62 -0.2 1,869,107 + BWI76_RS08875 0.65 +0.4 1,869,140 - BWI76_RS08875 0.66 +0.7 1,869,269 + BWI76_RS08875 0.74 +0.2 1,869,400 + BWI76_RS08875 0.81 +0.6 1,869,443 + BWI76_RS08875 0.84 +0.5 1,869,475 + BWI76_RS08875 0.86 +2.0 1,869,536 - BWI76_RS08875 0.89 +0.4 1,869,901 + BWI76_RS08880 0.18 -0.9 1,870,125 - BWI76_RS08880 0.41 -0.7 1,870,211 + BWI76_RS08880 0.49 +0.1 1,870,218 - BWI76_RS08880 0.50 +0.9 1,870,349 - BWI76_RS08880 0.63 +0.3 1,870,413 + BWI76_RS08880 0.70 +0.3 1,870,610 - BWI76_RS08880 0.90 +0.1 1,870,685 + +1.1 1,870,722 - +0.1
Or see this region's nucleotide sequence