Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08875

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08870 and BWI76_RS08875 overlap by 11 nucleotidesBWI76_RS08875 and BWI76_RS08880 overlap by 4 nucleotidesBWI76_RS08880 and BWI76_RS08885 overlap by 4 nucleotides BWI76_RS08870: BWI76_RS08870 - inner membrane transport permease YbhS, at 1,866,861 to 1,867,994 _RS08870 BWI76_RS08875: BWI76_RS08875 - multidrug ABC transporter ATP-binding protein, at 1,867,984 to 1,869,723 _RS08875 BWI76_RS08880: BWI76_RS08880 - secretion protein HlyD, at 1,869,720 to 1,870,712 _RS08880 BWI76_RS08885: BWI76_RS08885 - transcriptional regulator, at 1,870,709 to 1,871,386 _RS08885 Position (kb) 1867 1868 1869 1870Strain fitness (log2 ratio) -1 0 1 2at 1867.120 kb on + strand, within BWI76_RS08870at 1867.171 kb on - strand, within BWI76_RS08870at 1867.263 kb on + strand, within BWI76_RS08870at 1867.263 kb on - strand, within BWI76_RS08870at 1867.395 kb on + strand, within BWI76_RS08870at 1867.403 kb on - strand, within BWI76_RS08870at 1867.480 kb on - strand, within BWI76_RS08870at 1867.575 kb on + strand, within BWI76_RS08870at 1867.883 kb on + strandat 1868.136 kb on - strandat 1868.195 kb on + strand, within BWI76_RS08875at 1868.333 kb on - strand, within BWI76_RS08875at 1868.358 kb on + strand, within BWI76_RS08875at 1869.068 kb on + strand, within BWI76_RS08875at 1869.107 kb on + strand, within BWI76_RS08875at 1869.140 kb on - strand, within BWI76_RS08875at 1869.269 kb on + strand, within BWI76_RS08875at 1869.400 kb on + strand, within BWI76_RS08875at 1869.443 kb on + strand, within BWI76_RS08875at 1869.475 kb on + strand, within BWI76_RS08875at 1869.536 kb on - strand, within BWI76_RS08875at 1869.901 kb on + strand, within BWI76_RS08880at 1870.125 kb on - strand, within BWI76_RS08880at 1870.211 kb on + strand, within BWI76_RS08880at 1870.218 kb on - strand, within BWI76_RS08880at 1870.349 kb on - strand, within BWI76_RS08880at 1870.413 kb on + strand, within BWI76_RS08880at 1870.610 kb on - strand, within BWI76_RS08880at 1870.685 kb on + strandat 1870.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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1,867,120 + BWI76_RS08870 0.23 +0.6
1,867,171 - BWI76_RS08870 0.27 +0.6
1,867,263 + BWI76_RS08870 0.35 +0.6
1,867,263 - BWI76_RS08870 0.35 +0.3
1,867,395 + BWI76_RS08870 0.47 -0.1
1,867,403 - BWI76_RS08870 0.48 +0.4
1,867,480 - BWI76_RS08870 0.55 +0.2
1,867,575 + BWI76_RS08870 0.63 +0.3
1,867,883 + +0.4
1,868,136 - +0.0
1,868,195 + BWI76_RS08875 0.12 +0.3
1,868,333 - BWI76_RS08875 0.20 +0.3
1,868,358 + BWI76_RS08875 0.21 +0.6
1,869,068 + BWI76_RS08875 0.62 -0.2
1,869,107 + BWI76_RS08875 0.65 +0.4
1,869,140 - BWI76_RS08875 0.66 +0.7
1,869,269 + BWI76_RS08875 0.74 +0.2
1,869,400 + BWI76_RS08875 0.81 +0.6
1,869,443 + BWI76_RS08875 0.84 +0.5
1,869,475 + BWI76_RS08875 0.86 +2.0
1,869,536 - BWI76_RS08875 0.89 +0.4
1,869,901 + BWI76_RS08880 0.18 -0.9
1,870,125 - BWI76_RS08880 0.41 -0.7
1,870,211 + BWI76_RS08880 0.49 +0.1
1,870,218 - BWI76_RS08880 0.50 +0.9
1,870,349 - BWI76_RS08880 0.63 +0.3
1,870,413 + BWI76_RS08880 0.70 +0.3
1,870,610 - BWI76_RS08880 0.90 +0.1
1,870,685 + +1.1
1,870,722 - +0.1

Or see this region's nucleotide sequence