Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08865 and BWI76_RS08870 are separated by 121 nucleotides BWI76_RS08870 and BWI76_RS08875 overlap by 11 nucleotides
BWI76_RS08865: BWI76_RS08865 - ABC transporter inner membrane, at 1,865,633 to 1,866,739
_RS08865
BWI76_RS08870: BWI76_RS08870 - inner membrane transport permease YbhS, at 1,866,861 to 1,867,994
_RS08870
BWI76_RS08875: BWI76_RS08875 - multidrug ABC transporter ATP-binding protein, at 1,867,984 to 1,869,723
_RS08875
Position (kb)
1866
1867
1868 Strain fitness (log2 ratio)
-1
0
1 at 1866.259 kb on + strand, within BWI76_RS08865 at 1866.299 kb on - strand, within BWI76_RS08865 at 1866.558 kb on - strand, within BWI76_RS08865 at 1866.639 kb on + strand at 1866.698 kb on + strand at 1866.728 kb on - strand at 1866.775 kb on + strand at 1866.775 kb on + strand at 1866.783 kb on - strand at 1866.790 kb on + strand at 1867.120 kb on + strand, within BWI76_RS08870 at 1867.171 kb on - strand, within BWI76_RS08870 at 1867.263 kb on + strand, within BWI76_RS08870 at 1867.263 kb on - strand, within BWI76_RS08870 at 1867.395 kb on + strand, within BWI76_RS08870 at 1867.403 kb on - strand, within BWI76_RS08870 at 1867.480 kb on - strand, within BWI76_RS08870 at 1867.575 kb on + strand, within BWI76_RS08870 at 1867.883 kb on + strand at 1868.136 kb on - strand at 1868.195 kb on + strand, within BWI76_RS08875 at 1868.333 kb on - strand, within BWI76_RS08875 at 1868.358 kb on + strand, within BWI76_RS08875
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,866,259 + BWI76_RS08865 0.57 +0.2 1,866,299 - BWI76_RS08865 0.60 +0.3 1,866,558 - BWI76_RS08865 0.84 -0.1 1,866,639 + +0.4 1,866,698 + -0.1 1,866,728 - +0.3 1,866,775 + +0.4 1,866,775 + -0.1 1,866,783 - +0.0 1,866,790 + +0.1 1,867,120 + BWI76_RS08870 0.23 +0.6 1,867,171 - BWI76_RS08870 0.27 +0.6 1,867,263 + BWI76_RS08870 0.35 +0.6 1,867,263 - BWI76_RS08870 0.35 +0.3 1,867,395 + BWI76_RS08870 0.47 -0.1 1,867,403 - BWI76_RS08870 0.48 +0.4 1,867,480 - BWI76_RS08870 0.55 +0.2 1,867,575 + BWI76_RS08870 0.63 +0.3 1,867,883 + +0.4 1,868,136 - +0.0 1,868,195 + BWI76_RS08875 0.12 +0.3 1,868,333 - BWI76_RS08875 0.20 +0.3 1,868,358 + BWI76_RS08875 0.21 +0.6
Or see this region's nucleotide sequence