Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07870 and BWI76_RS07875 are separated by 5 nucleotides BWI76_RS07875 and BWI76_RS07880 are separated by 38 nucleotides BWI76_RS07880 and BWI76_RS07885 are separated by 11 nucleotides
BWI76_RS07870: BWI76_RS07870 - carbohydrate kinase, at 1,670,027 to 1,671,514
_RS07870
BWI76_RS07875: BWI76_RS07875 - dihydrofolate reductase, at 1,671,520 to 1,672,548
_RS07875
BWI76_RS07880: BWI76_RS07880 - PfkB domain-containing protein, at 1,672,587 to 1,673,531
_RS07880
BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544
_RS07885
Position (kb)
1671
1672
1673 Strain fitness (log2 ratio)
-1
0
1 at 1671.163 kb on - strand, within BWI76_RS07870 at 1671.190 kb on - strand, within BWI76_RS07870 at 1671.200 kb on - strand, within BWI76_RS07870 at 1671.417 kb on + strand at 1671.478 kb on - strand at 1671.614 kb on - strand at 1671.682 kb on - strand, within BWI76_RS07875 at 1671.999 kb on + strand, within BWI76_RS07875 at 1672.036 kb on - strand, within BWI76_RS07875 at 1672.102 kb on - strand, within BWI76_RS07875 at 1672.234 kb on - strand, within BWI76_RS07875 at 1672.789 kb on + strand, within BWI76_RS07880 at 1672.994 kb on + strand, within BWI76_RS07880 at 1673.002 kb on - strand, within BWI76_RS07880 at 1673.186 kb on + strand, within BWI76_RS07880 at 1673.186 kb on + strand, within BWI76_RS07880 at 1673.278 kb on - strand, within BWI76_RS07880 at 1673.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,671,163 - BWI76_RS07870 0.76 +0.5 1,671,190 - BWI76_RS07870 0.78 -0.1 1,671,200 - BWI76_RS07870 0.79 -0.3 1,671,417 + -0.1 1,671,478 - -0.0 1,671,614 - -0.9 1,671,682 - BWI76_RS07875 0.16 +0.1 1,671,999 + BWI76_RS07875 0.47 +0.8 1,672,036 - BWI76_RS07875 0.50 +0.4 1,672,102 - BWI76_RS07875 0.57 +1.3 1,672,234 - BWI76_RS07875 0.69 -0.0 1,672,789 + BWI76_RS07880 0.21 -0.2 1,672,994 + BWI76_RS07880 0.43 -0.5 1,673,002 - BWI76_RS07880 0.44 +0.4 1,673,186 + BWI76_RS07880 0.63 +0.1 1,673,186 + BWI76_RS07880 0.63 +0.0 1,673,278 - BWI76_RS07880 0.73 -0.3 1,673,524 - +0.4
Or see this region's nucleotide sequence