Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04255 and BWI76_RS04260 are separated by 51 nucleotides BWI76_RS04260 and BWI76_RS04265 are separated by 77 nucleotides BWI76_RS04265 and BWI76_RS04270 are separated by 203 nucleotides
BWI76_RS04255: BWI76_RS04255 - threonine synthase, at 875,922 to 877,202
_RS04255
BWI76_RS04260: BWI76_RS04260 - peroxide stress protein YaaA, at 877,254 to 878,027
_RS04260
BWI76_RS04265: BWI76_RS04265 - sodium:alanine symporter family protein, at 878,105 to 879,535
_RS04265
BWI76_RS04270: BWI76_RS04270 - transaldolase, at 879,739 to 880,692
_RS04270
Position (kb) 878
879
880 Strain fitness (log2 ratio) -2
-1
0
1 at 877.744 kb on + strand, within BWI76_RS04260 at 877.854 kb on - strand, within BWI76_RS04260 at 877.928 kb on + strand, within BWI76_RS04260 at 878.022 kb on + strand at 878.031 kb on - strand at 878.228 kb on + strand at 878.354 kb on - strand, within BWI76_RS04265 at 878.354 kb on - strand, within BWI76_RS04265 at 878.354 kb on - strand, within BWI76_RS04265 at 878.364 kb on - strand, within BWI76_RS04265 at 878.559 kb on - strand at 878.587 kb on + strand, within BWI76_RS04265 at 878.649 kb on - strand, within BWI76_RS04265 at 878.669 kb on - strand, within BWI76_RS04265 at 878.876 kb on - strand, within BWI76_RS04265 at 878.897 kb on - strand, within BWI76_RS04265 at 878.977 kb on - strand, within BWI76_RS04265 at 879.037 kb on - strand, within BWI76_RS04265 at 879.114 kb on - strand, within BWI76_RS04265 at 879.186 kb on + strand, within BWI76_RS04265 at 879.194 kb on - strand, within BWI76_RS04265 at 879.194 kb on - strand, within BWI76_RS04265 at 879.254 kb on + strand, within BWI76_RS04265 at 879.292 kb on + strand, within BWI76_RS04265 at 879.342 kb on - strand, within BWI76_RS04265 at 879.508 kb on - strand at 879.776 kb on - strand at 879.873 kb on - strand, within BWI76_RS04270 at 880.036 kb on + strand, within BWI76_RS04270 at 880.041 kb on + strand, within BWI76_RS04270 at 880.202 kb on - strand, within BWI76_RS04270 at 880.446 kb on + strand, within BWI76_RS04270 at 880.516 kb on - strand, within BWI76_RS04270 at 880.517 kb on + strand, within BWI76_RS04270
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 877,744 + BWI76_RS04260 0.63 -0.0 877,854 - BWI76_RS04260 0.78 -0.2 877,928 + BWI76_RS04260 0.87 +0.0 878,022 + -2.0 878,031 - -0.1 878,228 + -0.0 878,354 - BWI76_RS04265 0.17 +0.4 878,354 - BWI76_RS04265 0.17 -0.0 878,354 - BWI76_RS04265 0.17 +0.7 878,364 - BWI76_RS04265 0.18 +1.2 878,559 - +0.1 878,587 + BWI76_RS04265 0.34 +0.0 878,649 - BWI76_RS04265 0.38 +0.5 878,669 - BWI76_RS04265 0.39 +0.2 878,876 - BWI76_RS04265 0.54 -0.6 878,897 - BWI76_RS04265 0.55 +0.1 878,977 - BWI76_RS04265 0.61 +0.6 879,037 - BWI76_RS04265 0.65 +1.6 879,114 - BWI76_RS04265 0.71 -0.1 879,186 + BWI76_RS04265 0.76 -0.4 879,194 - BWI76_RS04265 0.76 -0.3 879,194 - BWI76_RS04265 0.76 +0.9 879,254 + BWI76_RS04265 0.80 +0.8 879,292 + BWI76_RS04265 0.83 +0.3 879,342 - BWI76_RS04265 0.86 -0.2 879,508 - +0.9 879,776 - +0.3 879,873 - BWI76_RS04270 0.14 -0.4 880,036 + BWI76_RS04270 0.31 -0.2 880,041 + BWI76_RS04270 0.32 -0.7 880,202 - BWI76_RS04270 0.49 -0.7 880,446 + BWI76_RS04270 0.74 +0.3 880,516 - BWI76_RS04270 0.81 +0.9 880,517 + BWI76_RS04270 0.82 +0.1
Or see this region's nucleotide sequence