Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04115 and BWI76_RS04120 overlap by 4 nucleotides BWI76_RS04120 and BWI76_RS04125 are separated by 145 nucleotides
BWI76_RS04115: BWI76_RS04115 - patatin family protein, at 845,881 to 846,954
_RS04115
BWI76_RS04120: BWI76_RS04120 - metal-dependent hydrolase, at 846,951 to 847,730
_RS04120
BWI76_RS04125: BWI76_RS04125 - NupC/NupG family nucleoside CNT transporter, at 847,876 to 849,153
_RS04125
Position (kb) 846
847
848 Strain fitness (log2 ratio) -2
-1
0
1 at 845.951 kb on + strand at 845.959 kb on - strand at 845.959 kb on - strand at 845.964 kb on - strand at 845.971 kb on + strand at 845.980 kb on - strand at 846.420 kb on - strand, within BWI76_RS04115 at 846.514 kb on + strand, within BWI76_RS04115 at 846.519 kb on + strand, within BWI76_RS04115 at 846.521 kb on + strand, within BWI76_RS04115 at 846.527 kb on - strand, within BWI76_RS04115 at 846.633 kb on - strand, within BWI76_RS04115 at 846.711 kb on - strand, within BWI76_RS04115 at 846.711 kb on - strand, within BWI76_RS04115 at 846.746 kb on - strand, within BWI76_RS04115 at 847.035 kb on + strand, within BWI76_RS04120 at 847.188 kb on - strand, within BWI76_RS04120 at 847.211 kb on + strand, within BWI76_RS04120 at 847.559 kb on + strand, within BWI76_RS04120 at 847.575 kb on - strand, within BWI76_RS04120 at 847.615 kb on + strand, within BWI76_RS04120 at 847.615 kb on + strand at 847.840 kb on + strand at 847.840 kb on + strand at 847.840 kb on + strand at 847.848 kb on - strand at 848.038 kb on - strand, within BWI76_RS04125 at 848.161 kb on + strand, within BWI76_RS04125 at 848.199 kb on - strand, within BWI76_RS04125 at 848.307 kb on - strand, within BWI76_RS04125 at 848.307 kb on - strand, within BWI76_RS04125 at 848.379 kb on + strand, within BWI76_RS04125 at 848.411 kb on - strand, within BWI76_RS04125 at 848.413 kb on + strand, within BWI76_RS04125 at 848.413 kb on + strand, within BWI76_RS04125 at 848.442 kb on + strand, within BWI76_RS04125 at 848.525 kb on - strand, within BWI76_RS04125 at 848.553 kb on + strand, within BWI76_RS04125
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 845,951 + +0.0 845,959 - +0.1 845,959 - -0.0 845,964 - -0.1 845,971 + +0.4 845,980 - +0.8 846,420 - BWI76_RS04115 0.50 +0.1 846,514 + BWI76_RS04115 0.59 +0.1 846,519 + BWI76_RS04115 0.59 +0.2 846,521 + BWI76_RS04115 0.60 +0.1 846,527 - BWI76_RS04115 0.60 -2.1 846,633 - BWI76_RS04115 0.70 +0.4 846,711 - BWI76_RS04115 0.77 -0.3 846,711 - BWI76_RS04115 0.77 -0.8 846,746 - BWI76_RS04115 0.81 -0.2 847,035 + BWI76_RS04120 0.11 +0.8 847,188 - BWI76_RS04120 0.30 +0.7 847,211 + BWI76_RS04120 0.33 +0.8 847,559 + BWI76_RS04120 0.78 -1.1 847,575 - BWI76_RS04120 0.80 +0.5 847,615 + BWI76_RS04120 0.85 -0.1 847,615 + -0.3 847,840 + +1.0 847,840 + -0.5 847,840 + +0.3 847,848 - -0.4 848,038 - BWI76_RS04125 0.13 +0.1 848,161 + BWI76_RS04125 0.22 -0.0 848,199 - BWI76_RS04125 0.25 -0.5 848,307 - BWI76_RS04125 0.34 +1.2 848,307 - BWI76_RS04125 0.34 -0.5 848,379 + BWI76_RS04125 0.39 +0.1 848,411 - BWI76_RS04125 0.42 +0.1 848,413 + BWI76_RS04125 0.42 -0.0 848,413 + BWI76_RS04125 0.42 +0.0 848,442 + BWI76_RS04125 0.44 -0.6 848,525 - BWI76_RS04125 0.51 +0.2 848,553 + BWI76_RS04125 0.53 +0.3
Or see this region's nucleotide sequence