Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02890 and BWI76_RS02895 overlap by 4 nucleotides BWI76_RS02895 and BWI76_RS02900 are separated by 124 nucleotides BWI76_RS02900 and BWI76_RS02905 are separated by 22 nucleotides
BWI76_RS02890: BWI76_RS02890 - L-seryl-tRNA selenium transferase, at 589,651 to 590,769
_RS02890
BWI76_RS02895: BWI76_RS02895 - hypothetical protein, at 590,766 to 591,506
_RS02895
BWI76_RS02900: BWI76_RS02900 - 6-phosphogluconolactonase, at 591,631 to 592,782
_RS02900
BWI76_RS02905: BWI76_RS02905 - transcriptional regulator, at 592,805 to 594,715
_RS02905
Position (kb) 591
592
593 Strain fitness (log2 ratio) -1
0
1
2 at 590.662 kb on - strand at 590.712 kb on + strand at 591.169 kb on - strand, within BWI76_RS02895 at 591.262 kb on + strand, within BWI76_RS02895 at 591.270 kb on - strand, within BWI76_RS02895 at 591.585 kb on + strand at 591.585 kb on + strand at 591.593 kb on - strand at 591.593 kb on - strand at 591.623 kb on - strand at 591.719 kb on - strand at 591.757 kb on - strand, within BWI76_RS02900 at 591.757 kb on - strand, within BWI76_RS02900 at 591.855 kb on - strand, within BWI76_RS02900 at 592.046 kb on + strand, within BWI76_RS02900 at 592.049 kb on - strand, within BWI76_RS02900 at 592.327 kb on + strand, within BWI76_RS02900 at 592.349 kb on + strand, within BWI76_RS02900 at 592.357 kb on - strand, within BWI76_RS02900 at 592.463 kb on - strand, within BWI76_RS02900 at 592.475 kb on + strand, within BWI76_RS02900 at 592.486 kb on + strand, within BWI76_RS02900 at 592.494 kb on - strand, within BWI76_RS02900 at 592.509 kb on + strand, within BWI76_RS02900 at 592.548 kb on + strand, within BWI76_RS02900 at 592.591 kb on + strand, within BWI76_RS02900 at 592.728 kb on + strand at 592.728 kb on + strand at 592.769 kb on - strand at 592.776 kb on + strand at 592.776 kb on + strand at 592.837 kb on + strand at 592.951 kb on - strand at 592.956 kb on - strand at 593.019 kb on + strand, within BWI76_RS02905 at 593.176 kb on - strand, within BWI76_RS02905 at 593.233 kb on - strand at 593.255 kb on - strand, within BWI76_RS02905 at 593.257 kb on + strand, within BWI76_RS02905 at 593.362 kb on - strand, within BWI76_RS02905 at 593.409 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 590,662 - +0.6 590,712 + +0.2 591,169 - BWI76_RS02895 0.54 -0.9 591,262 + BWI76_RS02895 0.67 -1.1 591,270 - BWI76_RS02895 0.68 -0.2 591,585 + -0.9 591,585 + -0.2 591,593 - -0.0 591,593 - +0.3 591,623 - -0.5 591,719 - -0.1 591,757 - BWI76_RS02900 0.11 +0.5 591,757 - BWI76_RS02900 0.11 +0.5 591,855 - BWI76_RS02900 0.19 +1.9 592,046 + BWI76_RS02900 0.36 +0.6 592,049 - BWI76_RS02900 0.36 -0.1 592,327 + BWI76_RS02900 0.60 +0.7 592,349 + BWI76_RS02900 0.62 -0.4 592,357 - BWI76_RS02900 0.63 +0.5 592,463 - BWI76_RS02900 0.72 -0.8 592,475 + BWI76_RS02900 0.73 +0.5 592,486 + BWI76_RS02900 0.74 +0.1 592,494 - BWI76_RS02900 0.75 +0.5 592,509 + BWI76_RS02900 0.76 +0.6 592,548 + BWI76_RS02900 0.80 -0.2 592,591 + BWI76_RS02900 0.83 -0.6 592,728 + +0.2 592,728 + -0.9 592,769 - -0.4 592,776 + +0.4 592,776 + -0.1 592,837 + -0.4 592,951 - -0.1 592,956 - +0.3 593,019 + BWI76_RS02905 0.11 +0.1 593,176 - BWI76_RS02905 0.19 -0.0 593,233 - +1.3 593,255 - BWI76_RS02905 0.24 +0.3 593,257 + BWI76_RS02905 0.24 -0.4 593,362 - BWI76_RS02905 0.29 -0.3 593,409 + +0.1
Or see this region's nucleotide sequence