Experiment: BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4382 and BT4383 are separated by 73 nucleotides BT4383 and BT4384 are separated by 661 nucleotides
BT4382: BT4382 - hypothetical protein (NCBI ptt file), at 5,774,560 to 5,775,624
BT4382
BT4383: BT4383 - putative sugar kinase (NCBI ptt file), at 5,775,698 to 5,777,209
BT4383
BT4384: BT4384 - hypothetical protein (NCBI ptt file), at 5,777,871 to 5,778,095
BT4384
Position (kb) 5775
5776
5777
5778 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5774.755 kb on - strand, within BT4382 at 5774.838 kb on - strand, within BT4382 at 5774.873 kb on - strand, within BT4382 at 5774.943 kb on + strand, within BT4382 at 5775.054 kb on + strand, within BT4382 at 5775.055 kb on - strand, within BT4382 at 5775.077 kb on - strand, within BT4382 at 5775.088 kb on - strand, within BT4382 at 5775.102 kb on + strand, within BT4382 at 5775.238 kb on - strand, within BT4382 at 5775.484 kb on + strand, within BT4382 at 5775.593 kb on - strand at 5775.596 kb on - strand at 5775.678 kb on - strand at 5775.700 kb on - strand at 5775.708 kb on - strand at 5775.743 kb on - strand at 5775.743 kb on - strand at 5775.843 kb on + strand at 5775.870 kb on - strand, within BT4383 at 5775.870 kb on - strand, within BT4383 at 5775.933 kb on + strand, within BT4383 at 5776.197 kb on - strand, within BT4383 at 5776.197 kb on - strand, within BT4383 at 5776.257 kb on + strand, within BT4383 at 5776.310 kb on + strand, within BT4383 at 5776.589 kb on + strand, within BT4383 at 5776.678 kb on + strand, within BT4383 at 5776.746 kb on - strand, within BT4383 at 5776.746 kb on - strand, within BT4383 at 5776.770 kb on + strand, within BT4383 at 5776.917 kb on - strand, within BT4383 at 5776.974 kb on + strand, within BT4383 at 5776.975 kb on - strand, within BT4383 at 5777.062 kb on + strand at 5777.165 kb on - strand at 5777.167 kb on - strand at 5777.223 kb on + strand at 5777.389 kb on - strand at 5777.531 kb on - strand at 5777.572 kb on + strand at 5777.645 kb on - strand at 5777.645 kb on - strand at 5777.716 kb on + strand at 5777.720 kb on + strand at 5777.720 kb on + strand at 5777.725 kb on + strand at 5777.730 kb on + strand at 5777.730 kb on + strand at 5777.731 kb on - strand at 5777.732 kb on + strand at 5777.752 kb on + strand at 5777.753 kb on - strand at 5777.793 kb on + strand at 5777.923 kb on + strand, within BT4384 at 5777.945 kb on + strand, within BT4384 at 5777.945 kb on + strand, within BT4384 at 5778.115 kb on + strand at 5778.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM remove 5,774,755 - BT4382 0.18 +1.1 5,774,838 - BT4382 0.26 +0.3 5,774,873 - BT4382 0.29 +2.1 5,774,943 + BT4382 0.36 +0.1 5,775,054 + BT4382 0.46 -1.9 5,775,055 - BT4382 0.46 -2.5 5,775,077 - BT4382 0.49 -0.7 5,775,088 - BT4382 0.50 -4.0 5,775,102 + BT4382 0.51 -0.9 5,775,238 - BT4382 0.64 -0.9 5,775,484 + BT4382 0.87 -0.9 5,775,593 - -0.9 5,775,596 - -0.9 5,775,678 - -0.9 5,775,700 - -1.9 5,775,708 - -0.9 5,775,743 - -1.9 5,775,743 - -2.5 5,775,843 + +0.1 5,775,870 - BT4383 0.11 -1.5 5,775,870 - BT4383 0.11 -2.5 5,775,933 + BT4383 0.16 -0.9 5,776,197 - BT4383 0.33 -1.9 5,776,197 - BT4383 0.33 -3.1 5,776,257 + BT4383 0.37 -2.5 5,776,310 + BT4383 0.40 -2.3 5,776,589 + BT4383 0.59 +0.7 5,776,678 + BT4383 0.65 -0.9 5,776,746 - BT4383 0.69 +0.1 5,776,746 - BT4383 0.69 -0.9 5,776,770 + BT4383 0.71 +1.1 5,776,917 - BT4383 0.81 -2.3 5,776,974 + BT4383 0.84 -2.6 5,776,975 - BT4383 0.84 -1.5 5,777,062 + +0.1 5,777,165 - +0.1 5,777,167 - -2.5 5,777,223 + -2.3 5,777,389 - +0.7 5,777,531 - +0.1 5,777,572 + -1.5 5,777,645 - +1.1 5,777,645 - -2.1 5,777,716 + -0.9 5,777,720 + -0.9 5,777,720 + -0.5 5,777,725 + -1.9 5,777,730 + -0.9 5,777,730 + -2.3 5,777,731 - -0.3 5,777,732 + -0.9 5,777,752 + -0.3 5,777,753 - -0.6 5,777,793 + +0.1 5,777,923 + BT4384 0.23 -2.0 5,777,945 + BT4384 0.33 -0.8 5,777,945 + BT4384 0.33 -0.9 5,778,115 + +1.1 5,778,157 - -0.9
Or see this region's nucleotide sequence