Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0182

Experiment: MoLS4 with Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmodB and DVU0182 are separated by 364 nucleotidesDVU0182 and DVU0183 are separated by 167 nucleotides DVU0181: modB - molybdenum ABC transporter, permease protein (TIGR), at 225,350 to 226,051 modB DVU0182: DVU0182 - radical SAM domain protein (TIGR), at 226,416 to 227,339 DVU0182 DVU0183: DVU0183 - methyl-accepting chemotaxis protein (TIGR), at 227,507 to 229,276 DVU0183 Position (kb) 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2at 225.437 kb on - strand, within modBat 225.439 kb on - strand, within modBat 225.489 kb on - strand, within modBat 225.495 kb on - strand, within modBat 225.549 kb on + strand, within modBat 225.628 kb on - strand, within modBat 225.643 kb on + strand, within modBat 225.651 kb on - strand, within modBat 225.651 kb on - strand, within modBat 225.651 kb on - strand, within modBat 225.716 kb on - strand, within modBat 225.767 kb on + strand, within modBat 225.802 kb on - strand, within modBat 225.802 kb on - strand, within modBat 225.829 kb on + strand, within modBat 225.837 kb on - strand, within modBat 225.913 kb on - strand, within modBat 225.937 kb on + strand, within modBat 226.018 kb on + strandat 226.047 kb on + strandat 226.082 kb on - strandat 226.209 kb on + strandat 226.278 kb on - strandat 226.287 kb on + strandat 226.295 kb on - strandat 226.300 kb on - strandat 226.310 kb on - strandat 226.361 kb on + strandat 226.379 kb on - strandat 226.391 kb on + strandat 226.417 kb on - strandat 226.417 kb on - strandat 226.463 kb on + strandat 226.518 kb on - strand, within DVU0182at 226.549 kb on - strand, within DVU0182at 226.597 kb on + strand, within DVU0182at 226.597 kb on + strand, within DVU0182at 226.597 kb on + strand, within DVU0182at 226.605 kb on - strand, within DVU0182at 226.605 kb on - strand, within DVU0182at 226.605 kb on - strand, within DVU0182at 226.630 kb on + strand, within DVU0182at 226.660 kb on - strand, within DVU0182at 226.789 kb on + strand, within DVU0182at 226.789 kb on + strand, within DVU0182at 226.790 kb on + strand, within DVU0182at 226.797 kb on - strand, within DVU0182at 226.805 kb on + strand, within DVU0182at 226.810 kb on + strand, within DVU0182at 226.934 kb on - strand, within DVU0182at 226.936 kb on + strand, within DVU0182at 226.939 kb on - strand, within DVU0182at 226.939 kb on - strand, within DVU0182at 226.944 kb on - strand, within DVU0182at 226.958 kb on + strand, within DVU0182at 227.017 kb on - strand, within DVU0182at 227.029 kb on - strand, within DVU0182at 227.078 kb on + strand, within DVU0182at 227.078 kb on + strand, within DVU0182at 227.082 kb on - strand, within DVU0182at 227.086 kb on - strand, within DVU0182at 227.155 kb on - strand, within DVU0182at 227.168 kb on + strand, within DVU0182at 227.182 kb on - strand, within DVU0182at 227.215 kb on + strand, within DVU0182at 227.222 kb on - strand, within DVU0182at 227.294 kb on + strandat 227.308 kb on - strandat 227.313 kb on - strandat 227.315 kb on - strandat 227.331 kb on - strandat 227.358 kb on + strandat 227.412 kb on - strandat 227.430 kb on - strandat 227.449 kb on - strandat 227.468 kb on - strandat 227.483 kb on - strandat 227.490 kb on + strandat 227.504 kb on + strandat 227.635 kb on + strandat 227.635 kb on + strandat 227.680 kb on - strandat 227.697 kb on + strand, within DVU0183at 227.730 kb on - strand, within DVU0183at 227.749 kb on - strand, within DVU0183at 227.814 kb on + strand, within DVU0183at 227.829 kb on + strand, within DVU0183at 227.829 kb on + strand, within DVU0183at 227.837 kb on - strand, within DVU0183at 227.846 kb on + strand, within DVU0183at 227.864 kb on - strand, within DVU0183at 227.864 kb on - strand, within DVU0183at 227.874 kb on - strand, within DVU0183at 227.885 kb on + strand, within DVU0183at 227.913 kb on - strand, within DVU0183at 227.935 kb on - strand, within DVU0183at 228.093 kb on + strand, within DVU0183at 228.115 kb on - strand, within DVU0183at 228.189 kb on - strand, within DVU0183at 228.221 kb on - strand, within DVU0183at 228.265 kb on + strand, within DVU0183at 228.273 kb on - strand, within DVU0183at 228.318 kb on + strand, within DVU0183

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N)
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225,437 - modB DVU0181 0.12 +0.1
225,439 - modB DVU0181 0.13 -0.1
225,489 - modB DVU0181 0.20 -0.4
225,495 - modB DVU0181 0.21 -0.5
225,549 + modB DVU0181 0.28 -0.1
225,628 - modB DVU0181 0.40 -0.4
225,643 + modB DVU0181 0.42 -0.2
225,651 - modB DVU0181 0.43 -0.9
225,651 - modB DVU0181 0.43 +0.8
225,651 - modB DVU0181 0.43 -0.4
225,716 - modB DVU0181 0.52 -0.4
225,767 + modB DVU0181 0.59 -0.6
225,802 - modB DVU0181 0.64 +0.9
225,802 - modB DVU0181 0.64 +0.6
225,829 + modB DVU0181 0.68 +0.8
225,837 - modB DVU0181 0.69 +1.0
225,913 - modB DVU0181 0.80 -2.4
225,937 + modB DVU0181 0.84 +1.3
226,018 + +1.2
226,047 + -0.1
226,082 - -0.1
226,209 + -0.1
226,278 - +1.0
226,287 + -0.1
226,295 - +0.4
226,300 - +0.3
226,310 - -1.1
226,361 + -0.1
226,379 - +0.1
226,391 + +0.4
226,417 - -0.2
226,417 - -0.3
226,463 + +0.3
226,518 - DVU0182 0.11 +0.8
226,549 - DVU0182 0.14 +0.1
226,597 + DVU0182 0.20 -0.6
226,597 + DVU0182 0.20 +0.4
226,597 + DVU0182 0.20 -0.8
226,605 - DVU0182 0.20 +0.1
226,605 - DVU0182 0.20 -0.2
226,605 - DVU0182 0.20 -0.2
226,630 + DVU0182 0.23 +0.7
226,660 - DVU0182 0.26 -1.1
226,789 + DVU0182 0.40 +0.1
226,789 + DVU0182 0.40 -2.3
226,790 + DVU0182 0.40 -0.5
226,797 - DVU0182 0.41 +2.1
226,805 + DVU0182 0.42 -1.6
226,810 + DVU0182 0.43 +1.1
226,934 - DVU0182 0.56 -0.1
226,936 + DVU0182 0.56 -0.1
226,939 - DVU0182 0.57 +1.2
226,939 - DVU0182 0.57 +0.1
226,944 - DVU0182 0.57 -0.3
226,958 + DVU0182 0.59 +0.6
227,017 - DVU0182 0.65 +0.2
227,029 - DVU0182 0.66 -0.7
227,078 + DVU0182 0.72 +0.0
227,078 + DVU0182 0.72 +0.6
227,082 - DVU0182 0.72 -0.8
227,086 - DVU0182 0.73 -0.8
227,155 - DVU0182 0.80 -0.2
227,168 + DVU0182 0.81 -1.3
227,182 - DVU0182 0.83 +0.3
227,215 + DVU0182 0.86 -0.7
227,222 - DVU0182 0.87 +0.2
227,294 + +1.0
227,308 - -0.1
227,313 - +0.6
227,315 - +0.0
227,331 - -0.3
227,358 + -0.0
227,412 - -0.5
227,430 - +0.5
227,449 - +2.2
227,468 - +0.3
227,483 - +0.1
227,490 + +0.5
227,504 + -0.1
227,635 + +1.1
227,635 + -0.2
227,680 - -0.5
227,697 + DVU0183 0.11 -0.6
227,730 - DVU0183 0.13 -0.2
227,749 - DVU0183 0.14 +0.2
227,814 + DVU0183 0.17 +0.2
227,829 + DVU0183 0.18 +1.4
227,829 + DVU0183 0.18 +0.3
227,837 - DVU0183 0.19 -0.2
227,846 + DVU0183 0.19 +0.5
227,864 - DVU0183 0.20 +0.9
227,864 - DVU0183 0.20 -0.3
227,874 - DVU0183 0.21 -1.6
227,885 + DVU0183 0.21 +0.2
227,913 - DVU0183 0.23 +0.7
227,935 - DVU0183 0.24 -0.1
228,093 + DVU0183 0.33 -0.3
228,115 - DVU0183 0.34 -0.7
228,189 - DVU0183 0.39 +0.4
228,221 - DVU0183 0.40 -0.4
228,265 + DVU0183 0.43 -0.2
228,273 - DVU0183 0.43 +0.0
228,318 + DVU0183 0.46 -1.9

Or see this region's nucleotide sequence