Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1069

Experiment: MoLS4 with Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1068 and DVU1069 overlap by 4 nucleotidesDVU1069 and rbsA are separated by 4 nucleotides DVU1068: DVU1068 - branched-chain amino acid ABC transporter, permease protein (TIGR), at 1,171,964 to 1,173,028 DVU1068 DVU1069: DVU1069 - branched chain amino acid ABC transporter, permease protein (TIGR), at 1,173,025 to 1,173,945 DVU1069 DVU1070: rbsA - branched chain amino acid ABC transporter, ATP-binding protein (TIGR), at 1,173,950 to 1,175,524 rbsA Position (kb) 1173 1174Strain fitness (log2 ratio) -2 -1 0 1at 1172.156 kb on - strand, within DVU1068at 1172.184 kb on + strand, within DVU1068at 1172.263 kb on + strand, within DVU1068at 1172.625 kb on + strand, within DVU1068at 1172.712 kb on - strand, within DVU1068at 1172.732 kb on + strand, within DVU1068at 1172.764 kb on + strand, within DVU1068at 1172.780 kb on - strand, within DVU1068at 1173.069 kb on - strandat 1173.193 kb on - strand, within DVU1069at 1173.197 kb on - strand, within DVU1069at 1173.234 kb on + strand, within DVU1069at 1173.328 kb on - strand, within DVU1069at 1173.334 kb on - strand, within DVU1069at 1173.468 kb on - strand, within DVU1069at 1173.593 kb on + strand, within DVU1069at 1173.595 kb on + strand, within DVU1069at 1173.651 kb on + strand, within DVU1069at 1173.688 kb on + strand, within DVU1069at 1174.277 kb on + strand, within rbsAat 1174.333 kb on + strand, within rbsAat 1174.589 kb on + strand, within rbsAat 1174.758 kb on + strand, within rbsAat 1174.838 kb on - strand, within rbsAat 1174.938 kb on + strand, within rbsA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N)
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1,172,156 - DVU1068 0.18 -1.0
1,172,184 + DVU1068 0.21 -0.9
1,172,263 + DVU1068 0.28 +0.6
1,172,625 + DVU1068 0.62 -0.6
1,172,712 - DVU1068 0.70 -0.8
1,172,732 + DVU1068 0.72 -2.6
1,172,764 + DVU1068 0.75 -0.9
1,172,780 - DVU1068 0.77 -0.5
1,173,069 - -2.0
1,173,193 - DVU1069 0.18 -0.6
1,173,197 - DVU1069 0.19 -1.1
1,173,234 + DVU1069 0.23 +0.6
1,173,328 - DVU1069 0.33 -0.8
1,173,334 - DVU1069 0.34 -0.8
1,173,468 - DVU1069 0.48 -0.6
1,173,593 + DVU1069 0.62 -0.6
1,173,595 + DVU1069 0.62 -0.7
1,173,651 + DVU1069 0.68 -0.9
1,173,688 + DVU1069 0.72 -1.6
1,174,277 + rbsA DVU1070 0.21 -0.6
1,174,333 + rbsA DVU1070 0.24 -0.6
1,174,589 + rbsA DVU1070 0.41 -0.2
1,174,758 + rbsA DVU1070 0.51 -0.8
1,174,838 - rbsA DVU1070 0.56 -1.8
1,174,938 + rbsA DVU1070 0.63 +0.5

Or see this region's nucleotide sequence