Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1040

Experiment: MoLS4 with Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisA and DVU1039 overlap by 4 nucleotidesDVU1039 and hisB overlap by 1 nucleotideshisB and tatC are separated by 16 nucleotides DVU1038: hisA - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR), at 1,141,452 to 1,142,201 hisA DVU1039: DVU1039 - lipoprotein, putative (TIGR), at 1,142,198 to 1,142,839 DVU1039 DVU1040: hisB - imidazoleglycerol-phosphate dehydratase (TIGR), at 1,142,839 to 1,143,447 hisB DVU1041: tatC - Sec-independent protein translocase TatC (TIGR), at 1,143,464 to 1,144,237 tatC Position (kb) 1142 1143 1144Strain fitness (log2 ratio) -3 -2 -1 0 1at 1142.159 kb on + strandat 1142.220 kb on - strandat 1142.302 kb on - strand, within DVU1039at 1142.586 kb on + strand, within DVU1039at 1142.618 kb on + strand, within DVU1039at 1142.621 kb on - strand, within DVU1039at 1142.660 kb on - strand, within DVU1039at 1143.234 kb on - strand, within hisBat 1143.284 kb on + strand, within hisBat 1143.343 kb on + strand, within hisBat 1143.370 kb on + strand, within hisBat 1143.370 kb on + strand, within hisBat 1143.462 kb on + strandat 1143.483 kb on - strandat 1143.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N)
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1,142,159 + -1.0
1,142,220 - +0.4
1,142,302 - DVU1039 0.16 +0.2
1,142,586 + DVU1039 0.60 -3.3
1,142,618 + DVU1039 0.65 -2.8
1,142,621 - DVU1039 0.66 -1.3
1,142,660 - DVU1039 0.72 +0.4
1,143,234 - hisB DVU1040 0.65 -2.5
1,143,284 + hisB DVU1040 0.73 -2.2
1,143,343 + hisB DVU1040 0.83 -3.0
1,143,370 + hisB DVU1040 0.87 -1.3
1,143,370 + hisB DVU1040 0.87 -2.7
1,143,462 + -0.1
1,143,483 - +0.5
1,143,497 + -1.8

Or see this region's nucleotide sequence