Experiment: MoLS4 with Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0651 and cheV-2 are separated by 139 nucleotides cheV-2 and atoC are separated by 610 nucleotides
DVU0651: DVU0651 - membrane protein, putative (TIGR), at 722,121 to 723,209
DVU0651
DVU0652: cheV-2 - chemotaxis protein CheV (TIGR), at 723,349 to 724,299
cheV-2
DVU0653: atoC - sigma-54 dependent transcriptional regulator, putative/response regulator (TIGR), at 724,910 to 726,595
atoC
Position (kb) 723
724
725 Strain fitness (log2 ratio) -1
0
1 at 722.374 kb on - strand, within DVU0651 at 722.435 kb on + strand, within DVU0651 at 722.474 kb on + strand, within DVU0651 at 722.478 kb on - strand, within DVU0651 at 722.558 kb on + strand, within DVU0651 at 722.572 kb on - strand, within DVU0651 at 722.623 kb on + strand, within DVU0651 at 722.631 kb on - strand, within DVU0651 at 722.654 kb on - strand, within DVU0651 at 722.768 kb on + strand, within DVU0651 at 722.807 kb on + strand, within DVU0651 at 722.807 kb on + strand, within DVU0651 at 722.807 kb on + strand, within DVU0651 at 722.875 kb on + strand, within DVU0651 at 722.885 kb on - strand, within DVU0651 at 722.924 kb on - strand, within DVU0651 at 722.986 kb on - strand, within DVU0651 at 722.998 kb on - strand, within DVU0651 at 722.998 kb on - strand, within DVU0651 at 723.073 kb on - strand, within DVU0651 at 723.090 kb on + strand, within DVU0651 at 723.098 kb on - strand, within DVU0651 at 723.116 kb on + strand at 723.184 kb on + strand at 723.184 kb on + strand at 723.191 kb on + strand at 723.192 kb on - strand at 723.282 kb on + strand at 723.282 kb on + strand at 723.290 kb on - strand at 723.339 kb on + strand at 723.512 kb on + strand, within cheV-2 at 723.600 kb on - strand, within cheV-2 at 723.605 kb on + strand, within cheV-2 at 723.615 kb on + strand, within cheV-2 at 723.643 kb on - strand, within cheV-2 at 723.643 kb on - strand, within cheV-2 at 723.703 kb on + strand, within cheV-2 at 723.767 kb on + strand, within cheV-2 at 723.767 kb on + strand, within cheV-2 at 723.778 kb on + strand, within cheV-2 at 723.809 kb on - strand, within cheV-2 at 723.885 kb on + strand, within cheV-2 at 723.995 kb on + strand, within cheV-2 at 724.003 kb on - strand, within cheV-2 at 724.106 kb on + strand, within cheV-2 at 724.106 kb on + strand, within cheV-2 at 724.106 kb on + strand, within cheV-2 at 724.114 kb on - strand, within cheV-2 at 724.163 kb on - strand, within cheV-2 at 724.165 kb on - strand, within cheV-2 at 724.198 kb on + strand, within cheV-2 at 724.310 kb on + strand at 724.374 kb on - strand at 724.382 kb on - strand at 724.467 kb on - strand at 724.709 kb on + strand at 724.790 kb on + strand at 725.046 kb on + strand at 725.050 kb on + strand at 725.058 kb on - strand at 725.058 kb on - strand at 725.058 kb on - strand at 725.098 kb on - strand, within atoC at 725.271 kb on + strand, within atoC at 725.279 kb on - strand, within atoC at 725.279 kb on - strand, within atoC at 725.279 kb on - strand, within atoC at 725.292 kb on + strand, within atoC at 725.292 kb on - strand, within atoC
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N) remove 722,374 - DVU0651 0.23 +0.0 722,435 + DVU0651 0.29 +0.8 722,474 + DVU0651 0.32 +0.4 722,478 - DVU0651 0.33 -0.7 722,558 + DVU0651 0.40 +0.5 722,572 - DVU0651 0.41 -0.8 722,623 + DVU0651 0.46 -0.2 722,631 - DVU0651 0.47 -0.3 722,654 - DVU0651 0.49 +0.1 722,768 + DVU0651 0.59 +0.0 722,807 + DVU0651 0.63 +0.6 722,807 + DVU0651 0.63 +0.6 722,807 + DVU0651 0.63 +0.5 722,875 + DVU0651 0.69 -0.8 722,885 - DVU0651 0.70 +0.6 722,924 - DVU0651 0.74 +0.3 722,986 - DVU0651 0.79 -0.3 722,998 - DVU0651 0.81 -0.2 722,998 - DVU0651 0.81 -0.7 723,073 - DVU0651 0.87 +1.5 723,090 + DVU0651 0.89 +0.8 723,098 - DVU0651 0.90 +0.0 723,116 + +0.8 723,184 + +0.0 723,184 + +0.6 723,191 + +0.1 723,192 - -0.2 723,282 + +0.0 723,282 + +0.8 723,290 - -1.0 723,339 + +0.0 723,512 + cheV-2 DVU0652 0.17 -1.3 723,600 - cheV-2 DVU0652 0.26 -0.4 723,605 + cheV-2 DVU0652 0.27 -0.1 723,615 + cheV-2 DVU0652 0.28 +0.3 723,643 - cheV-2 DVU0652 0.31 -0.4 723,643 - cheV-2 DVU0652 0.31 -0.2 723,703 + cheV-2 DVU0652 0.37 -0.2 723,767 + cheV-2 DVU0652 0.44 -1.5 723,767 + cheV-2 DVU0652 0.44 -0.0 723,778 + cheV-2 DVU0652 0.45 -1.1 723,809 - cheV-2 DVU0652 0.48 +0.1 723,885 + cheV-2 DVU0652 0.56 -0.6 723,995 + cheV-2 DVU0652 0.68 -0.3 724,003 - cheV-2 DVU0652 0.69 -0.6 724,106 + cheV-2 DVU0652 0.80 -0.1 724,106 + cheV-2 DVU0652 0.80 -0.6 724,106 + cheV-2 DVU0652 0.80 -1.1 724,114 - cheV-2 DVU0652 0.80 +0.1 724,163 - cheV-2 DVU0652 0.86 -0.1 724,165 - cheV-2 DVU0652 0.86 -1.3 724,198 + cheV-2 DVU0652 0.89 -1.4 724,310 + -0.3 724,374 - +0.2 724,382 - -1.4 724,467 - -0.2 724,709 + -0.2 724,790 + -0.6 725,046 + -1.1 725,050 + -0.1 725,058 - +0.0 725,058 - +0.7 725,058 - -1.3 725,098 - atoC DVU0653 0.11 -0.7 725,271 + atoC DVU0653 0.21 +0.4 725,279 - atoC DVU0653 0.22 -0.2 725,279 - atoC DVU0653 0.22 +0.8 725,279 - atoC DVU0653 0.22 -0.3 725,292 + atoC DVU0653 0.23 -0.2 725,292 - atoC DVU0653 0.23 +0.1
Or see this region's nucleotide sequence