Strain Fitness in Shewanella oneidensis MR-1 around SO2697

Experiment: LB - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB - with RNA protect
2,813,261	+				+1.0
2,813,261	+				+0.5
2,813,261	+				+0.9
2,813,273	+				+0.8
2,813,322	+				+0.9
2,813,322	+				+1.0
2,813,486	+		SO2694	0.24	+0.4
2,813,507	-		SO2694	0.30	+0.2
2,813,514	-		SO2694	0.32	+0.3
2,813,514	-		SO2694	0.32	+0.2
2,813,516	+		SO2694	0.32	-0.3
2,813,540	-		SO2694	0.39	+0.9
2,813,549	+		SO2694	0.42	+0.2
2,813,611	+		SO2694	0.59	+1.0
2,813,611	+		SO2694	0.59	+1.4
2,813,624	+		SO2694	0.63	+0.8
2,813,696	-		SO2694	0.83	-0.3
2,813,696	-		SO2694	0.83	+0.1
2,813,725	+				+0.9
2,813,734	-				-0.1
2,813,749	+				+0.8
2,813,797	+		SO2695	0.12	-1.1
2,813,811	+		SO2695	0.16	+0.2
2,813,830	-		SO2695	0.21	+1.0
2,813,866	+		SO2695	0.31	+1.3
2,813,867	+		SO2695	0.31	+1.8
2,813,874	-		SO2695	0.33	+1.5
2,813,875	-		SO2695	0.33	+1.1
2,813,935	+		SO2695	0.50	+1.2
2,813,935	+		SO2695	0.50	+1.0
2,813,935	+		SO2695	0.50	+2.1
2,813,935	+		SO2695	0.50	+0.4
2,813,935	+		SO2695	0.50	+0.8
2,813,935	+		SO2695	0.50	+1.3
2,813,935	+		SO2695	0.50	+0.8
2,813,935	+		SO2695	0.50	-0.2
2,813,943	-		SO2695	0.52	+0.9
2,813,978	+		SO2695	0.62	+1.2
2,813,989	+		SO2695	0.65	+0.1
2,814,036	+		SO2695	0.78	+1.1
2,814,036	+		SO2695	0.78	-1.3
2,814,036	+		SO2695	0.78	+1.6
2,814,036	+		SO2695	0.78	+1.9
2,814,038	-		SO2695	0.79	+1.1
2,814,041	+		SO2695	0.79	+0.4
2,814,041	+		SO2695	0.79	+0.7
2,814,041	+		SO2695	0.79	+1.2
2,814,041	+		SO2695	0.79	+0.7
2,814,041	+		SO2695	0.79	+0.1
2,814,044	-		SO2695	0.80	-2.0
2,814,044	-		SO2695	0.80	+1.6
2,814,049	-		SO2695	0.82	+2.7
2,814,049	-		SO2695	0.82	+0.4
2,814,049	-		SO2695	0.82	+1.0
2,814,108	+				+0.8
2,814,108	+				+0.4
2,814,108	+				+1.1
2,814,108	+				+0.9
2,814,108	+				+0.6
2,814,108	+				-0.6
2,814,108	+				+0.8
2,814,108	+				+1.1
2,814,108	+				+1.0
2,814,108	+				-1.6
2,814,108	+				-0.6
2,814,108	+				+0.6
2,814,108	+				-0.9
2,814,108	+				+0.7
2,814,108	+				+1.4
2,814,108	+				+0.7
2,814,108	+				+1.2
2,814,108	+				-0.4
2,814,108	+				+1.3
2,814,108	+				+0.1
2,814,108	+				+1.5
2,814,116	-				+1.3
2,814,116	-				+1.3
2,814,116	-				+1.5
2,814,116	-				+0.3
2,814,116	-				-2.0
2,814,116	-				-1.3
2,814,116	-				+0.7
2,814,116	-				+0.1
2,814,116	-				+1.3
2,814,116	-				+0.7
2,814,116	-				+0.6
2,814,116	-				+0.6
2,814,116	-				+0.3
2,814,116	-				+0.9
2,814,116	-				+0.5
2,814,116	-				+2.0
2,814,116	-				-0.0
2,814,116	-				+1.5
2,814,116	-				+1.9
2,814,116	-				+1.6
2,814,116	-				+0.3
2,814,116	-				+0.3
2,814,116	-				+1.2
2,814,116	-				+0.4
2,814,116	-				+1.2
2,814,116	-				+0.4
2,814,116	-				+1.2
2,814,116	-				+0.2
2,814,116	-				+1.6
2,814,116	-				+1.4
2,814,118	+				+0.2
2,814,137	-				+1.0
2,814,137	-				-2.0
2,814,137	-				+1.6
2,814,216	+				+0.4
2,814,216	+				+1.3
2,814,216	+				+1.9
2,814,216	+				+1.5
2,814,224	-				+1.6
2,814,224	-				+0.7
2,814,267	+				+0.6
2,814,267	+				+0.7
2,814,267	+				+1.2
2,814,267	+				+0.2
2,814,267	+				+2.2
2,814,275	-				-1.3
2,814,275	-				+0.3
2,814,275	-				+0.6
2,814,360	-				+1.0
2,814,368	+				+1.2
2,814,403	+				+1.3
2,814,404	-				-0.3
2,814,411	-		SO2697	0.10	+0.6
2,814,436	-		SO2697	0.12	+0.9
2,814,520	+		SO2697	0.17	+1.7
2,814,520	+		SO2697	0.17	+0.7
2,814,520	+		SO2697	0.17	+0.6
2,814,520	+		SO2697	0.17	+0.8
2,814,520	+		SO2697	0.17	+0.4
2,814,520	+		SO2697	0.17	+0.5
2,814,520	+		SO2697	0.17	+1.4
2,814,520	+		SO2697	0.17	+0.9
2,814,521	+		SO2697	0.17	+0.8
2,814,528	-		SO2697	0.17	+0.7
2,814,528	-		SO2697	0.17	+2.6
2,814,528	-		SO2697	0.17	+0.1
2,814,528	-		SO2697	0.17	+1.5
2,814,528	-		SO2697	0.17	+0.8
2,814,543	-		SO2697	0.18	+0.7
2,814,553	+		SO2697	0.19	+0.0
2,814,586	+		SO2697	0.21	+0.4
2,814,586	+		SO2697	0.21	+2.2
2,814,586	+		SO2697	0.21	-0.6
2,814,594	-		SO2697	0.21	+0.5
2,814,594	-		SO2697	0.21	+1.0
2,814,594	-		SO2697	0.21	+0.7
2,814,624	-		SO2697	0.23	+0.6
2,814,631	+		SO2697	0.24	+0.9
2,814,632	-		SO2697	0.24	+0.7
2,814,639	-		SO2697	0.24	+1.5
2,814,639	-		SO2697	0.24	+1.8
2,814,663	+		SO2697	0.25	+0.2
2,814,667	-		SO2697	0.26	+1.4
2,814,686	+		SO2697	0.27	+1.0
2,814,691	-		SO2697	0.27	-0.5
2,814,691	-		SO2697	0.27	+1.4
2,814,705	+		SO2697	0.28	+0.5
2,814,705	+		SO2697	0.28	+1.0
2,814,712	+		SO2697	0.28	+1.3
2,814,712	+		SO2697	0.28	-0.6
2,814,712	+		SO2697	0.28	+1.2
2,814,713	-		SO2697	0.28	+2.2
2,814,713	-		SO2697	0.28	+1.1
2,814,713	-		SO2697	0.28	+1.0
2,814,713	-		SO2697	0.28	+1.0
2,814,717	+		SO2697	0.29	+1.0
2,814,719	-		SO2697	0.29	-0.0
2,814,723	+		SO2697	0.29	+0.1
2,814,723	+		SO2697	0.29	+0.5
2,814,725	-		SO2697	0.29	+2.1
2,814,731	-		SO2697	0.30	+1.2
2,814,734	+		SO2697	0.30	+0.3
2,814,734	+		SO2697	0.30	+1.7
2,814,734	+		SO2697	0.30	+1.6
2,814,734	+		SO2697	0.30	+0.9
2,814,734	+		SO2697	0.30	+0.9
2,814,734	+		SO2697	0.30	+0.7
2,814,734	+		SO2697	0.30	+0.6
2,814,734	+		SO2697	0.30	+0.3
2,814,734	+		SO2697	0.30	+0.9
2,814,734	+		SO2697	0.30	+0.5
2,814,742	-		SO2697	0.30	+1.2
2,814,742	-		SO2697	0.30	+1.2
2,814,742	-		SO2697	0.30	-0.3
2,814,743	-		SO2697	0.30	+1.7
2,814,768	+		SO2697	0.32	+0.7
2,814,768	+		SO2697	0.32	+0.4
2,814,768	+		SO2697	0.32	+0.6
2,814,768	+		SO2697	0.32	+1.1
2,814,768	+		SO2697	0.32	+1.2
2,814,776	-		SO2697	0.32	+0.2
2,814,776	-		SO2697	0.32	-1.3
2,814,790	+		SO2697	0.33	+0.7
2,814,798	-		SO2697	0.34	+0.1
2,814,811	-		SO2697	0.34	-0.6
2,814,822	+		SO2697	0.35	+1.0
2,814,839	+		SO2697	0.36	+1.0
2,814,847	-		SO2697	0.37	+0.3
2,814,849	+		SO2697	0.37	+0.5
2,814,859	+		SO2697	0.37	+0.8
2,814,859	+		SO2697	0.37	+0.7
2,814,862	-		SO2697	0.37	+1.4
2,814,867	-		SO2697	0.38	+0.9
2,814,875	+		SO2697	0.38	+0.9
2,814,894	+		SO2697	0.39	+0.0
2,814,918	-		SO2697	0.41	-0.1
2,814,932	+		SO2697	0.42	+0.6
2,814,940	+		SO2697	0.42	-0.4
2,814,945	+		SO2697	0.42	+0.7
2,814,948	-		SO2697	0.43	+1.4
2,814,953	-		SO2697	0.43	+1.3
2,815,010	-		SO2697	0.46	+0.1
2,815,056	-		SO2697	0.49	+1.2
2,815,129	-		SO2697	0.53	+0.1
2,815,129	-		SO2697	0.53	-0.2
2,815,148	+		SO2697	0.55	-0.0
2,815,156	-		SO2697	0.55	+1.8
2,815,156	-		SO2697	0.55	+0.1
2,815,156	-		SO2697	0.55	+0.2
2,815,163	+		SO2697	0.56	+2.3
2,815,171	-		SO2697	0.56	-0.7
2,815,171	-		SO2697	0.56	-0.2
2,815,183	+		SO2697	0.57	+0.1
2,815,184	+		SO2697	0.57	+2.8
2,815,185	+		SO2697	0.57	+0.7
2,815,191	+		SO2697	0.57	+1.1
2,815,191	+		SO2697	0.57	+1.2
2,815,191	+		SO2697	0.57	+0.5
2,815,191	+		SO2697	0.57	+0.4
2,815,191	+		SO2697	0.57	+0.5
2,815,191	+		SO2697	0.57	+0.8
2,815,191	+		SO2697	0.57	-0.2
2,815,191	+		SO2697	0.57	+0.9
2,815,192	-		SO2697	0.57	+1.3
2,815,199	-		SO2697	0.58	+0.5
2,815,199	-		SO2697	0.58	+0.6
2,815,199	-		SO2697	0.58	-0.1
2,815,199	-		SO2697	0.58	+0.7
2,815,199	-		SO2697	0.58	+1.0
2,815,199	-		SO2697	0.58	-0.1
2,815,199	-		SO2697	0.58	+0.7
2,815,200	-		SO2697	0.58	+0.6
2,815,225	+		SO2697	0.59	-0.3
2,815,225	+		SO2697	0.59	+0.8
2,815,226	+		SO2697	0.59	+0.9
2,815,232	+		SO2697	0.60	-1.1
2,815,249	+		SO2697	0.61	+0.3
2,815,266	-		SO2697	0.62	+0.8
2,815,277	-		SO2697	0.62	+0.1
2,815,357	-		SO2697	0.67	+1.0
2,815,380	+		SO2697	0.69	+0.2
2,815,402	+		SO2697	0.70	-0.3
2,815,424	-		SO2697	0.71	+0.3
2,815,437	-		SO2697	0.72	+1.0
2,815,575	+		SO2697	0.80	+1.4
2,815,583	-		SO2697	0.81	+0.7
2,815,583	-		SO2697	0.81	+1.5
2,815,590	-		SO2697	0.81	+0.9
2,815,590	-		SO2697	0.81	+0.8
2,815,785	-				+1.2
2,815,843	-				+1.8
2,815,849	-				+0.8
2,815,860	-				+0.4
2,815,945	-				+0.4
2,816,047	-				+1.0
2,816,104	-		SO2698	0.14	+2.0
2,816,140	-		SO2698	0.16	+1.8
2,816,140	-		SO2698	0.16	+0.1
2,816,174	+		SO2698	0.19	+0.5
2,816,182	-		SO2698	0.20	+0.6
2,816,219	-		SO2698	0.22	+1.0
2,816,257	+		SO2698	0.25	+0.7
2,816,265	-		SO2698	0.26	+0.9
2,816,265	-		SO2698	0.26	+1.8
2,816,265	-		SO2698	0.26	-0.1
2,816,275	-		SO2698	0.27	+0.4
2,816,329	-		SO2698	0.31	+1.1
2,816,392	+		SO2698	0.36	+0.3
2,816,400	-		SO2698	0.36	+0.2
2,816,442	-		SO2698	0.39	+0.9
2,816,513	+		SO2698	0.45	+0.6
2,816,518	+		SO2698	0.45	+1.1
2,816,562	+		SO2698	0.49	+0.5
2,816,570	-		SO2698	0.49	-1.4
2,816,582	+		SO2698	0.50	+1.1
2,816,582	+		SO2698	0.50	+0.4
2,816,590	-		SO2698	0.51	+2.6
2,816,622	-		SO2698	0.53	+0.5
2,816,642	-		SO2698	0.55	+0.9
2,816,711	-		SO2698	0.60	+1.4
2,816,718	+		SO2698	0.60	+0.5
2,816,781	-		SO2698	0.65	+1.0
2,816,781	-		SO2698	0.65	+0.1
2,816,804	-		SO2698	0.67	+2.2
2,816,816	+		SO2698	0.68	+0.7
2,816,829	+		SO2698	0.69	+0.7
2,816,837	-		SO2698	0.69	+1.6
2,816,874	-		SO2698	0.72	-0.1
2,816,888	-		SO2698	0.73	+1.6