Strain Fitness in Shewanella oneidensis MR-1 around SO2669

Experiment: LB - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB - with RNA protect
2,797,159	+		SO2667	0.66	+1.1
2,797,159	+		SO2667	0.66	+1.0
2,797,164	+		SO2667	0.67	+1.5
2,797,164	+		SO2667	0.67	+1.4
2,797,172	-		SO2667	0.69	+0.6
2,797,194	+		SO2667	0.73	+1.2
2,797,194	+		SO2667	0.73	+1.7
2,797,194	+		SO2667	0.73	+1.3
2,797,202	-		SO2667	0.74	+2.8
2,797,202	-		SO2667	0.74	+1.5
2,797,202	-		SO2667	0.74	+0.3
2,797,202	-		SO2667	0.74	+0.2
2,797,202	-		SO2667	0.74	+1.1
2,797,202	-		SO2667	0.74	+0.6
2,797,209	-		SO2667	0.75	+1.2
2,797,303	+				+0.2
2,797,304	+				+0.3
2,797,316	-				+0.2
2,797,358	+				+1.4
2,797,363	+				+0.3
2,797,370	-				+0.8
2,797,449	+				+0.3
2,797,449	+				+1.1
2,797,449	+				+1.1
2,797,449	+				+0.5
2,797,457	-				+0.6
2,797,457	-				+1.9
2,797,457	-				-0.0
2,797,457	-				-0.3
2,797,488	+				+0.6
2,797,496	-				+0.7
2,797,507	+				+0.5
2,797,507	+				+1.6
2,797,507	+				+0.2
2,797,507	+				+0.8
2,797,515	-				+1.5
2,797,549	-				-0.8
2,797,614	-				+0.9
2,797,620	+				+1.3
2,797,622	+				+1.2
2,797,628	-				+1.2
2,797,635	+				+1.8
2,797,690	+				+1.7
2,797,707	+				+0.9
2,797,712	+				+0.7
2,797,712	+				+0.5
2,797,712	+				+1.1
2,797,712	+				+1.3
2,797,712	+				+0.4
2,797,720	-				+1.4
2,797,720	-				+0.6
2,797,720	-				+0.9
2,797,720	-				+3.6
2,797,720	-				+0.9
2,797,720	-				-0.2
2,797,722	+				-0.7
2,797,729	+				+0.2
2,797,729	+				+0.8
2,797,729	+				-0.8
2,797,729	+				+0.7
2,797,729	+				+0.7
2,797,729	+				+0.4
2,797,729	+				-0.5
2,797,729	+				+0.8
2,797,729	+				+1.4
2,797,729	+				+1.0
2,797,729	+				+0.2
2,797,729	+				+1.8
2,797,729	+				+1.4
2,797,729	+				+0.9
2,797,729	+				+1.0
2,797,729	+				+1.8
2,797,737	-				+1.4
2,797,737	-				+0.5
2,797,737	-				+1.6
2,797,737	-				+0.9
2,797,737	-				+2.8
2,797,737	-				-0.7
2,797,737	-				+0.4
2,797,737	-				+0.5
2,797,737	-				+2.3
2,797,737	-				-0.3
2,797,737	-				+1.2
2,797,737	-				+0.5
2,797,737	-				+0.1
2,797,737	-				+0.2
2,797,783	-		SO2668	0.19	+0.5
2,797,798	-		SO2668	0.22	+0.6
2,797,808	-		SO2668	0.25	+0.6
2,797,830	+		SO2668	0.30	+1.8
2,797,830	+		SO2668	0.30	-0.3
2,797,833	-		SO2668	0.30	+0.4
2,797,840	-		SO2668	0.32	-0.2
2,797,861	+		SO2668	0.37	+1.3
2,797,880	-		SO2668	0.41	+1.0
2,797,881	+		SO2668	0.41	+1.2
2,797,923	-		SO2668	0.51	+1.2
2,797,942	-		SO2668	0.55	+2.3
2,797,976	-		SO2668	0.63	+0.8
2,798,014	+		SO2668	0.72	+2.5
2,798,021	+		SO2668	0.73	+1.7
2,798,021	+		SO2668	0.73	-0.2
2,798,022	-		SO2668	0.74	+0.4
2,798,022	-		SO2668	0.74	+1.6
2,798,023	+		SO2668	0.74	+1.3
2,798,028	+		SO2668	0.75	+0.6
2,798,029	+		SO2668	0.75	+0.3
2,798,030	+		SO2668	0.75	-1.2
2,798,031	-		SO2668	0.76	+2.0
2,798,036	-		SO2668	0.77	+1.4
2,798,036	-		SO2668	0.77	+1.6
2,798,036	-		SO2668	0.77	+3.6
2,798,061	-		SO2668	0.82	-0.8
2,798,066	-		SO2668	0.84	+1.7
2,798,154	-				+0.5
2,798,161	-				+0.8
2,798,189	+		SO2669	0.18	+0.5
2,798,190	+		SO2669	0.18	+0.3
2,798,197	-		SO2669	0.22	+1.3
2,798,205	+		SO2669	0.26	+1.3
2,798,205	+		SO2669	0.26	+0.6
2,798,205	+		SO2669	0.26	+0.6
2,798,205	+		SO2669	0.26	+0.1
2,798,213	-		SO2669	0.30	-0.8
2,798,213	-		SO2669	0.30	-0.4
2,798,215	+		SO2669	0.31	+0.7
2,798,216	+		SO2669	0.32	+0.5
2,798,216	+		SO2669	0.32	+1.4
2,798,216	+		SO2669	0.32	-0.6
2,798,223	-		SO2669	0.35	-0.6
2,798,223	-		SO2669	0.35	+1.6
2,798,223	-		SO2669	0.35	+0.9
2,798,223	-		SO2669	0.35	+0.7
2,798,224	-		SO2669	0.36	+0.1
2,798,234	+		SO2669	0.41	+0.9
2,798,234	+		SO2669	0.41	+1.4
2,798,234	+		SO2669	0.41	-2.3
2,798,242	+		SO2669	0.45	+2.0
2,798,242	-		SO2669	0.45	+2.7
2,798,242	-		SO2669	0.45	+1.2
2,798,252	-		SO2669	0.50	+0.4
2,798,252	-		SO2669	0.50	+1.0
2,798,252	-		SO2669	0.50	+1.0
2,798,280	+		SO2669	0.65	+1.1
2,798,335	-				+0.7
2,798,362	+				+0.9
2,798,373	+				+1.3
2,798,385	+				+0.3
2,798,385	+				+1.5
2,798,437	+				-0.0
2,798,440	-		SO2670	0.10	+0.1
2,798,444	-		SO2670	0.11	+0.3
2,798,467	+		SO2670	0.16	+0.3
2,798,473	+		SO2670	0.17	-2.0
2,798,481	-		SO2670	0.19	+0.6
2,798,482	+		SO2670	0.19	+0.2
2,798,500	-		SO2670	0.23	-0.2
2,798,514	+		SO2670	0.27	+0.8
2,798,522	-		SO2670	0.28	-0.3
2,798,550	-		SO2670	0.35	+1.0
2,798,554	+		SO2670	0.36	+1.0
2,798,598	+		SO2670	0.45	+0.5
2,798,598	+		SO2670	0.45	+1.1
2,798,598	+		SO2670	0.45	+1.8
2,798,598	+		SO2670	0.45	+0.9
2,798,598	+		SO2670	0.45	+0.9
2,798,603	+		SO2670	0.47	+0.3
2,798,603	+		SO2670	0.47	+0.4
2,798,606	-		SO2670	0.47	-1.6
2,798,606	-		SO2670	0.47	+1.4
2,798,606	-		SO2670	0.47	-2.0
2,798,606	-		SO2670	0.47	+0.4
2,798,606	-		SO2670	0.47	+0.7
2,798,621	-		SO2670	0.51	+0.5
2,798,629	-		SO2670	0.52	+2.8
2,798,704	-		SO2670	0.69	+1.0
2,798,745	+		SO2670	0.78	+0.6
2,798,748	-		SO2670	0.79	+0.8
2,798,750	+		SO2670	0.79	+0.6
2,798,779	+		SO2670	0.86	+0.8
2,798,851	+				+1.3
2,798,883	-				+0.4
2,798,912	+				+0.5
2,798,920	-				+0.4
2,798,923	+				+1.3
2,798,928	+				+1.1
2,798,929	+				-0.2
2,798,981	+		SO2671	0.11	-0.2
2,798,981	+		SO2671	0.11	+1.1
2,798,984	+		SO2671	0.11	+0.9
2,798,989	-		SO2671	0.12	+0.6
2,798,989	-		SO2671	0.12	+2.3
2,798,991	+		SO2671	0.12	+0.2
2,798,991	+		SO2671	0.12	+0.0
2,798,991	+		SO2671	0.12	+0.5
2,798,999	-		SO2671	0.14	+1.1
2,799,003	+		SO2671	0.14	+0.5
2,799,003	+		SO2671	0.14	+0.3
2,799,003	+		SO2671	0.14	+0.5
2,799,003	+		SO2671	0.14	+1.7
2,799,003	+		SO2671	0.14	+1.3
2,799,003	+		SO2671	0.14	+0.4
2,799,011	-		SO2671	0.16	-0.6
2,799,011	-		SO2671	0.16	+0.7
2,799,011	-		SO2671	0.16	+0.9
2,799,011	-		SO2671	0.16	+0.5
2,799,011	-		SO2671	0.16	+1.0
2,799,011	-		SO2671	0.16	+0.4
2,799,011	-		SO2671	0.16	+0.1
2,799,011	-		SO2671	0.16	+1.0
2,799,013	+		SO2671	0.16	+0.6
2,799,021	-		SO2671	0.17	+0.2
2,799,021	-		SO2671	0.17	+1.5
2,799,027	+		SO2671	0.18	+2.1
2,799,040	+		SO2671	0.21	+0.3
2,799,051	+		SO2671	0.23	+1.6
2,799,099	-		SO2671	0.31	+0.5
2,799,161	-		SO2671	0.41	-1.0
2,799,233	+		SO2671	0.53	+0.5
2,799,241	-		SO2671	0.55	+0.4
2,799,332	+		SO2671	0.70	+1.1