Strain Fitness in Shewanella oneidensis MR-1 around SO2664

Experiment: LB - with RNA protect

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2661 and SO2662 overlap by 20 nucleotidesSO2662 and SO2662.1 overlap by 234 nucleotidesSO2662.1 and SO2663 are separated by 94 nucleotidesSO2663 and SO2664 are separated by 83 nucleotidesSO2664 and SO2665 are separated by 35 nucleotidesSO2665 and SO2666 are separated by 9 nucleotidesSO2666 and SO2667 are separated by 8 nucleotides SO2661: SO2661 - hypothetical protein (NCBI ptt file), at 2,794,446 to 2,794,721 SO2661 SO2662: SO2662 - hypothetical protein (NCBI ptt file), at 2,794,702 to 2,794,938 SO2662 SO2662.1: SO2662.1 - hypothetical protein (NCBI ptt file), at 2,794,705 to 2,794,887 SO2662.1 SO2663: SO2663 - conserved hypothetical protein (NCBI ptt file), at 2,794,982 to 2,795,551 SO2663 SO2664: SO2664 - hypothetical protein (NCBI ptt file), at 2,795,635 to 2,795,928 SO2664 SO2665: SO2665 - hypothetical protein (NCBI ptt file), at 2,795,964 to 2,796,221 SO2665 SO2666: SO2666 - hypothetical protein (NCBI ptt file), at 2,796,231 to 2,796,797 SO2666 SO2667: SO2667 - conserved hypothetical protein (NCBI ptt file), at 2,796,806 to 2,797,339 SO2667 Position (kb) 2795 2796Strain fitness (log2 ratio) -2 -1 0 1 2at 2794.643 kb on + strand, within SO2661at 2794.643 kb on + strand, within SO2661at 2794.651 kb on - strand, within SO2661at 2794.671 kb on - strand, within SO2661at 2794.702 kb on - strandat 2794.771 kb on - strandat 2794.989 kb on + strandat 2795.013 kb on - strandat 2795.018 kb on - strandat 2795.077 kb on + strand, within SO2663at 2795.111 kb on + strand, within SO2663at 2795.185 kb on + strand, within SO2663at 2795.192 kb on - strand, within SO2663at 2795.221 kb on - strand, within SO2663at 2795.276 kb on - strand, within SO2663at 2795.331 kb on - strand, within SO2663at 2795.333 kb on - strand, within SO2663at 2795.364 kb on - strand, within SO2663at 2795.364 kb on - strand, within SO2663at 2795.366 kb on + strand, within SO2663at 2795.374 kb on - strand, within SO2663at 2795.398 kb on + strand, within SO2663at 2795.424 kb on + strand, within SO2663at 2795.432 kb on - strand, within SO2663at 2795.432 kb on - strand, within SO2663at 2795.432 kb on - strand, within SO2663at 2795.434 kb on + strand, within SO2663at 2795.434 kb on + strand, within SO2663at 2795.434 kb on + strand, within SO2663at 2795.449 kb on - strand, within SO2663at 2795.531 kb on + strandat 2795.534 kb on - strandat 2795.539 kb on - strandat 2795.574 kb on - strandat 2795.654 kb on + strandat 2795.662 kb on - strandat 2795.662 kb on - strandat 2795.706 kb on - strand, within SO2664at 2795.783 kb on + strand, within SO2664at 2795.783 kb on + strand, within SO2664at 2795.783 kb on + strand, within SO2664at 2795.783 kb on + strand, within SO2664at 2795.783 kb on + strand, within SO2664at 2795.783 kb on + strand, within SO2664at 2795.783 kb on + strand, within SO2664at 2795.791 kb on - strand, within SO2664at 2795.791 kb on - strand, within SO2664at 2795.791 kb on - strand, within SO2664at 2795.799 kb on + strand, within SO2664at 2795.812 kb on + strand, within SO2664at 2795.992 kb on + strand, within SO2665at 2796.054 kb on - strand, within SO2665at 2796.054 kb on - strand, within SO2665at 2796.054 kb on - strand, within SO2665at 2796.104 kb on + strand, within SO2665at 2796.112 kb on - strand, within SO2665at 2796.197 kb on - strandat 2796.216 kb on + strandat 2796.216 kb on + strandat 2796.216 kb on + strandat 2796.279 kb on - strandat 2796.282 kb on - strandat 2796.336 kb on - strand, within SO2666at 2796.346 kb on - strand, within SO2666at 2796.351 kb on - strand, within SO2666at 2796.375 kb on + strand, within SO2666at 2796.442 kb on - strand, within SO2666at 2796.442 kb on - strand, within SO2666at 2796.442 kb on - strand, within SO2666at 2796.467 kb on + strand, within SO2666at 2796.587 kb on + strand, within SO2666at 2796.595 kb on - strand, within SO2666at 2796.622 kb on + strand, within SO2666at 2796.622 kb on + strand, within SO2666at 2796.624 kb on + strand, within SO2666at 2796.630 kb on - strand, within SO2666at 2796.630 kb on - strand, within SO2666at 2796.630 kb on - strand, within SO2666at 2796.630 kb on - strand, within SO2666at 2796.665 kb on + strand, within SO2666at 2796.665 kb on + strand, within SO2666at 2796.666 kb on - strand, within SO2666at 2796.705 kb on + strand, within SO2666at 2796.705 kb on + strand, within SO2666at 2796.741 kb on - strandat 2796.745 kb on + strandat 2796.750 kb on + strandat 2796.758 kb on - strandat 2796.758 kb on - strandat 2796.759 kb on + strandat 2796.815 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.816 kb on + strandat 2796.824 kb on - strandat 2796.824 kb on - strandat 2796.824 kb on - strandat 2796.824 kb on - strandat 2796.824 kb on - strandat 2796.826 kb on + strandat 2796.896 kb on + strand, within SO2667

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Per-strain Table

Position Strand Gene LocusTag Fraction LB - with RNA protect
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2,794,643 + SO2661 0.71 +0.4
2,794,643 + SO2661 0.71 +2.5
2,794,651 - SO2661 0.74 +0.5
2,794,671 - SO2661 0.82 +0.4
2,794,702 - +0.9
2,794,771 - -1.2
2,794,989 + -0.2
2,795,013 - -0.3
2,795,018 - +1.0
2,795,077 + SO2663 0.17 +0.5
2,795,111 + SO2663 0.23 +0.5
2,795,185 + SO2663 0.36 +0.7
2,795,192 - SO2663 0.37 +0.7
2,795,221 - SO2663 0.42 +1.7
2,795,276 - SO2663 0.52 +0.4
2,795,331 - SO2663 0.61 +1.3
2,795,333 - SO2663 0.62 +1.4
2,795,364 - SO2663 0.67 +1.8
2,795,364 - SO2663 0.67 +0.8
2,795,366 + SO2663 0.67 +0.5
2,795,374 - SO2663 0.69 +0.8
2,795,398 + SO2663 0.73 -0.8
2,795,424 + SO2663 0.78 +0.2
2,795,432 - SO2663 0.79 +0.7
2,795,432 - SO2663 0.79 +1.1
2,795,432 - SO2663 0.79 +0.8
2,795,434 + SO2663 0.79 -0.6
2,795,434 + SO2663 0.79 +0.6
2,795,434 + SO2663 0.79 +0.5
2,795,449 - SO2663 0.82 +0.3
2,795,531 + +0.9
2,795,534 - +1.1
2,795,539 - +0.6
2,795,574 - +1.3
2,795,654 + +2.1
2,795,662 - +0.9
2,795,662 - +1.4
2,795,706 - SO2664 0.24 +1.3
2,795,783 + SO2664 0.50 +0.7
2,795,783 + SO2664 0.50 +0.5
2,795,783 + SO2664 0.50 +0.6
2,795,783 + SO2664 0.50 +0.8
2,795,783 + SO2664 0.50 +1.4
2,795,783 + SO2664 0.50 +0.4
2,795,783 + SO2664 0.50 +1.3
2,795,791 - SO2664 0.53 +1.2
2,795,791 - SO2664 0.53 +0.8
2,795,791 - SO2664 0.53 +1.8
2,795,799 + SO2664 0.56 +0.1
2,795,812 + SO2664 0.60 +0.6
2,795,992 + SO2665 0.11 +1.1
2,796,054 - SO2665 0.35 +1.9
2,796,054 - SO2665 0.35 +1.6
2,796,054 - SO2665 0.35 +1.2
2,796,104 + SO2665 0.54 +1.3
2,796,112 - SO2665 0.57 +0.7
2,796,197 - +1.7
2,796,216 + +0.6
2,796,216 + +0.9
2,796,216 + +1.5
2,796,279 - +0.5
2,796,282 - -0.3
2,796,336 - SO2666 0.19 -1.3
2,796,346 - SO2666 0.20 +0.6
2,796,351 - SO2666 0.21 +1.6
2,796,375 + SO2666 0.25 +1.0
2,796,442 - SO2666 0.37 +0.7
2,796,442 - SO2666 0.37 +0.7
2,796,442 - SO2666 0.37 +0.8
2,796,467 + SO2666 0.42 +0.5
2,796,587 + SO2666 0.63 -0.0
2,796,595 - SO2666 0.64 +0.7
2,796,622 + SO2666 0.69 +1.5
2,796,622 + SO2666 0.69 +0.8
2,796,624 + SO2666 0.69 -1.8
2,796,630 - SO2666 0.70 -0.0
2,796,630 - SO2666 0.70 +0.9
2,796,630 - SO2666 0.70 +2.3
2,796,630 - SO2666 0.70 +0.8
2,796,665 + SO2666 0.77 +0.6
2,796,665 + SO2666 0.77 +2.2
2,796,666 - SO2666 0.77 +0.4
2,796,705 + SO2666 0.84 +0.5
2,796,705 + SO2666 0.84 +1.6
2,796,741 - -1.2
2,796,745 + +1.3
2,796,750 + +1.4
2,796,758 - +0.3
2,796,758 - +2.3
2,796,759 + +0.1
2,796,815 + +0.2
2,796,816 + +0.5
2,796,816 + -0.0
2,796,816 + +0.9
2,796,816 + +0.5
2,796,816 + -2.0
2,796,816 + +0.9
2,796,816 + +1.4
2,796,816 + +0.8
2,796,816 + +0.8
2,796,816 + +0.9
2,796,816 + -0.4
2,796,816 + +1.5
2,796,824 - +0.7
2,796,824 - +0.8
2,796,824 - +1.4
2,796,824 - +0.2
2,796,824 - +0.5
2,796,826 + +0.5
2,796,896 + SO2667 0.17 +0.3

Or see this region's nucleotide sequence