Strain Fitness in Shewanella oneidensis MR-1 around SO2004

Experiment: LB - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB - with RNA protect
2,102,730	-		SO2002	0.72	+0.4
2,102,747	+		SO2002	0.74	+0.9
2,102,748	-		SO2002	0.74	+0.5
2,102,754	-		SO2002	0.74	+0.2
2,102,755	-		SO2002	0.75	-1.0
2,102,756	-		SO2002	0.75	+0.7
2,102,764	-		SO2002	0.76	-0.0
2,102,766	+		SO2002	0.76	-0.5
2,102,766	+		SO2002	0.76	+0.1
2,102,766	+		SO2002	0.76	+0.7
2,102,766	+		SO2002	0.76	-0.2
2,102,766	+		SO2002	0.76	-0.5
2,102,766	+		SO2002	0.76	-0.9
2,102,766	+		SO2002	0.76	-2.7
2,102,766	+		SO2002	0.76	-0.3
2,102,766	+		SO2002	0.76	+0.3
2,102,767	+		SO2002	0.76	-1.2
2,102,767	+		SO2002	0.76	-0.9
2,102,767	+		SO2002	0.76	-0.5
2,102,767	+		SO2002	0.76	-0.0
2,102,774	-		SO2002	0.77	-0.3
2,102,774	-		SO2002	0.77	+0.8
2,102,774	-		SO2002	0.77	+1.3
2,102,774	-		SO2002	0.77	-1.3
2,102,774	-		SO2002	0.77	-0.5
2,102,774	-		SO2002	0.77	+0.4
2,102,774	-		SO2002	0.77	-0.5
2,102,774	-		SO2002	0.77	-0.7
2,102,774	-		SO2002	0.77	-0.6
2,102,775	-		SO2002	0.77	-1.5
2,102,775	-		SO2002	0.77	-1.5
2,102,775	-		SO2002	0.77	-0.9
2,102,775	-		SO2002	0.77	-0.1
2,102,781	+		SO2002	0.77	-0.9
2,102,807	+		SO2002	0.80	-0.2
2,102,807	+		SO2002	0.80	-1.2
2,102,815	-		SO2002	0.81	-0.4
2,102,818	-		SO2002	0.82	-0.2
2,102,831	+		SO2002	0.83	-0.7
2,102,837	+		SO2002	0.84	-1.5
2,102,837	+		SO2002	0.84	-0.5
2,102,837	+		SO2002	0.84	-0.8
2,102,837	+		SO2002	0.84	-0.7
2,102,837	+		SO2002	0.84	-0.4
2,102,837	+		SO2002	0.84	-0.9
2,102,837	+		SO2002	0.84	-0.1
2,102,837	+		SO2002	0.84	+1.0
2,102,837	+		SO2002	0.84	-0.4
2,102,837	+		SO2002	0.84	-0.4
2,102,837	+		SO2002	0.84	-0.6
2,102,837	+		SO2002	0.84	-0.5
2,102,837	+		SO2002	0.84	-3.5
2,102,845	-		SO2002	0.84	+0.6
2,102,845	-		SO2002	0.84	-0.8
2,102,845	-		SO2002	0.84	-0.7
2,102,845	-		SO2002	0.84	+0.6
2,102,845	-		SO2002	0.84	+0.4
2,102,845	-		SO2002	0.84	+0.5
2,102,845	-		SO2002	0.84	+0.1
2,102,845	-		SO2002	0.84	-1.1
2,102,856	+		SO2002	0.86	-0.6
2,102,856	+		SO2002	0.86	-0.2
2,102,864	-		SO2002	0.87	-0.5
2,102,864	-		SO2002	0.87	+0.5
2,102,864	-		SO2002	0.87	+0.0
2,102,864	-		SO2002	0.87	-0.3
2,102,864	-		SO2002	0.87	-0.3
2,102,876	-		SO2002	0.88	+0.4
2,102,886	+		SO2002	0.89	-0.9
2,102,886	+		SO2002	0.89	+0.1
2,102,886	+		SO2002	0.89	-1.1
2,102,886	-		SO2002	0.89	+0.1
2,102,886	-		SO2002	0.89	+0.5
2,102,893	+		SO2002	0.90	+0.5
2,102,894	-				-0.6
2,102,920	+				-1.5
2,102,931	-				-0.5
2,102,971	+				+0.7
2,103,012	-				-0.6
2,103,021	+				-0.1
2,103,021	+				-1.1
2,103,021	+				-0.9
2,103,021	+				-0.1
2,103,021	+				-1.5
2,103,021	+				-2.6
2,103,021	+				-0.2
2,103,021	+				-0.9
2,103,027	+				-0.5
2,103,029	-				-1.1
2,103,029	-				-0.3
2,103,029	-				-0.1
2,103,029	-				-0.7
2,103,029	-				+0.4
2,103,029	-				-0.4
2,103,029	-				-1.1
2,103,029	-				+1.1
2,103,029	-				-0.3
2,103,029	-				-1.3
2,103,072	+				+0.2
2,103,077	+				-0.2
2,103,080	-				-0.6
2,103,102	+				-0.6
2,103,104	+				-0.9
2,103,108	+				-0.7
2,103,108	+				+0.2
2,103,150	+				+1.1
2,103,165	+				-0.0
2,103,170	+				-2.2
2,103,173	-				-0.8
2,103,173	-				-1.1
2,103,177	+				+0.5
2,103,177	+				-0.2
2,103,177	+				-0.4
2,103,177	+				+0.3
2,103,177	+				+0.5
2,103,177	+				-0.0
2,103,178	+				+0.6
2,103,185	-				-1.1
2,103,185	-				-0.4
2,103,185	-				-1.3
2,103,185	-				-1.9
2,103,185	-				-0.6
2,103,185	-				+0.9
2,103,186	-				-0.4
2,103,195	+				+0.1
2,103,206	+				-1.4
2,103,206	+				-0.1
2,103,206	+				+0.5
2,103,214	-				-1.1
2,103,214	-				-0.2
2,103,216	+				+1.1
2,103,216	+				+0.1
2,103,216	+				-0.3
2,103,216	+				-0.4
2,103,216	+				+0.2
2,103,216	+				+0.0
2,103,216	+				+0.8
2,103,216	+				+0.0
2,103,216	+				-0.6
2,103,216	+				+0.0
2,103,216	+				+0.6
2,103,216	+				-0.3
2,103,216	+				+0.4
2,103,216	+				+0.6
2,103,216	+				-1.4
2,103,216	+				-1.3
2,103,224	-				-0.5
2,103,224	-				-0.5
2,103,224	-				-0.0
2,103,224	-				-0.7
2,103,224	-				+0.1
2,103,259	+				+0.2
2,103,261	-				-1.0
2,103,267	-				-2.7
2,103,284	+				+1.5
2,103,286	-				-1.0
2,103,290	+				-1.0
2,103,298	+				+1.1
2,103,298	+				+0.1
2,103,298	+				+0.2
2,103,298	+				+0.6
2,103,298	+				+0.3
2,103,298	+				-1.1
2,103,298	+				-0.9
2,103,298	+				+0.4
2,103,298	+				-0.5
2,103,298	+				-0.9
2,103,298	+				+0.1
2,103,298	+				-0.4
2,103,298	+				-0.1
2,103,298	+				-0.1
2,103,298	-				-1.4
2,103,306	-				-0.3
2,103,306	-				+0.1
2,103,306	-				-0.4
2,103,306	-				-1.1
2,103,306	-				-0.7
2,103,306	-				+1.1
2,103,306	-				-1.9
2,103,306	-				+0.0
2,103,306	-				+0.1
2,103,307	+				-0.5
2,103,308	+				-0.6
2,103,316	-				-0.1
2,103,317	+				-1.5
2,103,317	+				+0.8
2,103,317	+				-0.4
2,103,317	+				-0.1
2,103,317	+				-0.2
2,103,317	+				-0.6
2,103,317	+				+0.7
2,103,317	+				-1.7
2,103,317	+				+0.7
2,103,320	-				+0.3
2,103,322	+				+0.1
2,103,322	+				-0.7
2,103,322	+				-1.2
2,103,322	+				-0.9
2,103,322	+				-0.7
2,103,322	+				+1.3
2,103,322	+				-1.7
2,103,322	+				-1.4
2,103,325	-				+0.7
2,103,325	-				+2.8
2,103,325	-				-1.1
2,103,325	-				-0.3
2,103,325	-				-1.3
2,103,325	-				-0.6
2,103,325	-				-0.0
2,103,325	-				-0.6
2,103,325	-				+1.1
2,103,325	-				-0.7
2,103,325	-				+0.1
2,103,325	-				-0.4
2,103,330	-				-0.4
2,103,330	-				+0.0
2,103,330	-				+0.5
2,103,332	+				-0.4
2,103,340	-				-0.5
2,103,341	+				-0.7
2,103,341	+				-0.2
2,103,341	+				+0.3
2,103,341	+				+0.1
2,103,341	+				+0.6
2,103,341	+				-1.5
2,103,341	+				+1.1
2,103,349	-				-1.1
2,103,349	-				-0.2
2,103,349	-				-0.1
2,103,349	-				-1.6
2,103,349	-				-0.5
2,103,349	-				-0.6
2,103,349	-				-0.6
2,103,349	-				-0.9
2,103,349	-				+0.1
2,103,354	+				-0.5
2,103,354	+				-0.2
2,103,360	+				+0.6
2,103,360	+				+0.6
2,103,362	-				-0.1
2,103,362	-				-0.4
2,103,368	-				-0.5
2,103,368	-				-0.5
2,103,368	-				-1.2
2,103,368	-				-0.6
2,103,406	+				+0.0
2,103,414	-				+0.0
2,103,414	-				-0.3
2,103,414	-				-0.7
2,103,414	-				-0.3
2,103,416	+				-1.3
2,103,423	-				-0.2
2,103,424	-				-1.8
2,103,425	+				-0.4
2,103,428	-				+0.1
2,103,442	-				-0.5
2,103,442	-				-0.1
2,103,442	-				-1.0
2,103,474	-				-0.8
2,103,475	+				-0.0
2,103,482	-				+0.1
2,103,482	-				+0.5
2,103,482	-				-0.3
2,103,482	-				-0.2
2,103,490	+				-0.7
2,103,492	+				-0.1
2,103,498	-				-1.5
2,103,500	+				-0.8
2,103,504	+				+0.7
2,103,508	-				+0.1
2,103,508	-				-1.3
2,103,508	-				-0.9
2,103,510	+				+0.1
2,103,514	+				+1.0
2,103,514	+				+0.0
2,103,514	+				-0.8
2,103,518	-				-0.0
2,103,522	-				-0.2
2,103,541	+				-0.3
2,103,578	+				-0.5
2,103,586	+				+0.8
2,103,595	+				-0.5
2,103,595	-				-0.5
2,103,627	-				-0.1
2,103,633	+				+0.1
2,103,633	+				-0.9
2,103,638	+				+0.4
2,103,638	+				-0.8
2,103,638	+				+1.4
2,103,641	-				-1.8
2,103,646	-				+1.1
2,103,646	-				-1.2
2,103,646	-				-1.2
2,103,646	-				-0.4
2,103,646	-				-0.9
2,103,651	-				+0.3
2,103,676	+				+0.1
2,103,682	+				-0.6
2,103,682	+				+0.1
2,103,683	+				-0.2
2,103,683	+				+0.6
2,103,683	+				-0.4
2,103,683	+				-0.3
2,103,683	+				+0.1
2,103,683	+				-0.6
2,103,690	-				-0.9
2,103,690	-				-0.2
2,103,691	+				+2.6
2,103,691	-				-0.6
2,103,692	+				-0.3
2,103,698	-				-0.8
2,103,700	-				-0.3
2,103,702	+				+1.0
2,103,706	+				-0.2
2,103,707	+				+0.8
2,103,707	+				+1.1
2,103,707	+				+0.5
2,103,707	+				-0.1
2,103,707	+				+0.2
2,103,708	+				+0.9
2,103,715	-				-1.9
2,103,716	-				-0.0
2,103,716	-				-0.3
2,103,727	+				-0.6
2,103,727	+				+0.7
2,103,727	+				+0.3
2,103,727	+				+0.5
2,103,727	+				-1.1
2,103,727	+				-0.7
2,103,727	+				-0.1
2,103,727	+				-0.6
2,103,727	+				-1.9
2,103,727	+				-0.4
2,103,727	+				+0.5
2,103,727	+				-0.5
2,103,727	+				-0.5
2,103,727	+				-0.9
2,103,727	+				+0.4
2,103,727	+				-0.7
2,103,727	+				-0.1
2,103,727	+				-0.7
2,103,727	+				-0.8
2,103,727	+				+0.6
2,103,727	+				+1.3
2,103,727	+				-0.3
2,103,727	+				-0.3
2,103,727	+				-0.6
2,103,727	+				-1.5
2,103,727	+				-0.1
2,103,727	+				+0.5
2,103,727	+				-0.3
2,103,727	+				-1.3
2,103,727	+				-0.7
2,103,727	+				-1.6
2,103,727	+				+0.2
2,103,727	+				-0.0
2,103,727	+				+0.6
2,103,727	+				-0.5
2,103,727	-				-0.7
2,103,728	+				-0.1
2,103,735	+				-1.7
2,103,735	-				+0.2
2,103,735	-				-0.3
2,103,735	-				-1.2
2,103,735	-				+0.0
2,103,735	-				-1.1
2,103,735	-				+0.2
2,103,735	-				-1.5
2,103,735	-				+0.1
2,103,735	-				-1.7
2,103,735	-				-0.1
2,103,735	-				+0.1
2,103,735	-				-0.2
2,103,735	-				-0.1
2,103,735	-				-0.1
2,103,735	-				+0.3
2,103,735	-				+0.7
2,103,735	-				+0.5
2,103,735	-				-0.8
2,103,735	-				-0.2
2,103,735	-				-0.3
2,103,735	-				-0.5
2,103,735	-				-0.3
2,103,735	-				-0.1
2,103,735	-				-0.7
2,103,735	-				-0.2
2,103,735	-				+0.2
2,103,735	-				-1.9
2,103,743	-				-0.9
2,103,743	-				-0.1
2,103,799	+		SO2004	0.20	-2.3
2,103,804	+		SO2004	0.21	-1.3
2,103,804	+		SO2004	0.21	+0.7
2,103,804	+		SO2004	0.21	-0.0
2,103,805	+		SO2004	0.21	+0.3
2,103,805	+		SO2004	0.21	-0.5
2,103,812	-		SO2004	0.23	+0.5
2,103,838	+		SO2004	0.28	-0.3
2,103,838	+		SO2004	0.28	-0.5
2,103,842	+		SO2004	0.29	-0.3
2,103,842	+		SO2004	0.29	-0.1
2,103,850	-		SO2004	0.31	-0.1
2,103,850	-		SO2004	0.31	+0.0
2,103,850	-		SO2004	0.31	+0.3
2,103,850	-		SO2004	0.31	-0.3
2,103,850	-		SO2004	0.31	+0.1
2,103,850	-		SO2004	0.31	-1.6
2,103,850	-		SO2004	0.31	+0.2
2,103,889	-		SO2004	0.39	+0.0
2,103,889	-		SO2004	0.39	-0.1
2,103,889	-		SO2004	0.39	-0.4
2,103,914	-		SO2004	0.44	+0.2
2,103,914	-		SO2004	0.44	+0.1
2,103,916	+		SO2004	0.44	-1.3
2,103,916	+		SO2004	0.44	-0.4
2,103,916	+		SO2004	0.44	+0.1
2,103,916	+		SO2004	0.44	-0.6
2,103,924	-		SO2004	0.46	+0.5
2,103,924	-		SO2004	0.46	-1.1
2,103,924	-		SO2004	0.46	-0.5
2,103,924	-		SO2004	0.46	-0.1
2,103,924	-		SO2004	0.46	-0.3
2,103,924	-		SO2004	0.46	-0.7
2,103,927	-		SO2004	0.47	-0.6
2,103,937	-		SO2004	0.49	-0.1
2,103,940	+		SO2004	0.49	-0.6
2,103,948	-		SO2004	0.51	-0.7
2,103,948	-		SO2004	0.51	-0.2
2,103,980	-		SO2004	0.58	+0.1
2,103,995	+		SO2004	0.61	-0.6
2,103,995	+		SO2004	0.61	+0.3
2,104,003	-		SO2004	0.62	-0.9
2,104,018	+		SO2004	0.66	-0.2
2,104,018	+		SO2004	0.66	+0.3
2,104,018	+		SO2004	0.66	-0.1
2,104,018	+		SO2004	0.66	-0.3
2,104,026	-		SO2004	0.67	-0.3
2,104,068	+		SO2004	0.76	-0.0
2,104,089	+		SO2004	0.80	+0.4
2,104,089	+		SO2004	0.80	-2.2
2,104,089	+		SO2004	0.80	+0.4
2,104,089	+		SO2004	0.80	-0.2
2,104,089	+		SO2004	0.80	-1.2
2,104,089	+		SO2004	0.80	-0.8
2,104,089	+		SO2004	0.80	+0.0
2,104,089	+		SO2004	0.80	+2.9
2,104,089	+		SO2004	0.80	-0.6
2,104,089	+		SO2004	0.80	+0.1
2,104,091	+		SO2004	0.81	-0.4
2,104,091	+		SO2004	0.81	-1.0
2,104,091	+		SO2004	0.81	-0.4
2,104,091	+		SO2004	0.81	+0.3
2,104,091	+		SO2004	0.81	-0.5
2,104,091	+		SO2004	0.81	+1.1
2,104,091	+		SO2004	0.81	+0.1
2,104,091	+		SO2004	0.81	-0.3
2,104,091	+		SO2004	0.81	-1.2
2,104,091	+		SO2004	0.81	-1.7
2,104,097	-		SO2004	0.82	-1.0
2,104,097	-		SO2004	0.82	-0.1
2,104,097	-		SO2004	0.82	-1.2
2,104,097	-		SO2004	0.82	-0.5
2,104,097	-		SO2004	0.82	-0.1
2,104,097	-		SO2004	0.82	-0.7
2,104,097	-		SO2004	0.82	-1.0
2,104,097	-		SO2004	0.82	-0.3
2,104,097	-		SO2004	0.82	+0.9
2,104,097	-		SO2004	0.82	-0.4
2,104,098	-		SO2004	0.82	-0.0
2,104,098	-		SO2004	0.82	-0.3
2,104,098	-		SO2004	0.82	-0.2
2,104,098	-		SO2004	0.82	+0.1
2,104,099	-		SO2004	0.82	-0.7
2,104,099	-		SO2004	0.82	+0.7
2,104,100	+		SO2004	0.83	-1.1
2,104,134	-		SO2004	0.90	-1.3
2,104,146	-				-0.2
2,104,146	-				+0.5
2,104,146	-				-0.0
2,104,146	-				-0.9
2,104,176	+				-0.2
2,104,191	+				+0.3
2,104,191	+				+0.8
2,104,201	-				-0.9
2,104,203	+				-2.6
2,104,203	+				-0.7
2,104,203	+				-0.4
2,104,211	-				-1.4
2,104,211	-				+0.3
2,104,211	-				-0.4
2,104,247	-				+0.1
2,104,254	+				-0.6
2,104,309	-		SO2005	0.14	-0.1
2,104,314	+		SO2005	0.16	-0.4
2,104,323	-		SO2005	0.18	+0.7
2,104,325	+		SO2005	0.19	-1.5
2,104,354	+		SO2005	0.27	-2.2
2,104,389	+		SO2005	0.37	+0.2
2,104,468	+		SO2005	0.59	-0.2
2,104,498	+		SO2005	0.67	+1.0
2,104,499	+		SO2005	0.67	+0.3
2,104,499	+		SO2005	0.67	-0.0
2,104,499	+		SO2005	0.67	-0.8
2,104,506	-		SO2005	0.69	-0.2
2,104,507	-		SO2005	0.69	+0.5
2,104,507	-		SO2005	0.69	-0.4
2,104,507	-		SO2005	0.69	-0.7
2,104,507	-		SO2005	0.69	+1.9
2,104,507	-		SO2005	0.69	+0.5
2,104,507	-		SO2005	0.69	+0.2
2,104,507	-		SO2005	0.69	-1.0
2,104,606	-				-0.1
2,104,718	+				+0.3
2,104,755	+				+0.1
2,104,763	+				-0.5
2,104,773	+				+0.9
2,104,784	+				-0.5
2,104,937	+		SO2006	0.19	+0.1
2,104,945	-		SO2006	0.20	+0.5
2,104,963	-		SO2006	0.22	+0.2
2,104,982	-		SO2006	0.24	-0.5
2,104,982	-		SO2006	0.24	-0.1
2,104,982	-		SO2006	0.24	-0.4
2,104,990	-		SO2006	0.24	-0.6
2,105,130	-		SO2006	0.39	-0.3
2,105,152	-		SO2006	0.42	-0.4