Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23885 and HSERO_RS23890 are separated by 88 nucleotides HSERO_RS23890 and HSERO_RS23895 are separated by 271 nucleotides HSERO_RS23895 and HSERO_RS23900 are separated by 4 nucleotides
HSERO_RS23885: HSERO_RS23885 - XRE family transcriptional regulator, at 5,474,833 to 5,475,753
_RS23885
HSERO_RS23890: HSERO_RS23890 - hypothetical protein, at 5,475,842 to 5,476,123
_RS23890
HSERO_RS23895: HSERO_RS23895 - amidophosphoribosyltransferase, at 5,476,395 to 5,476,973
_RS23895
HSERO_RS23900: HSERO_RS23900 - hypothetical protein, at 5,476,978 to 5,477,580
_RS23900
Position (kb) 5475
5476
5477 Strain fitness (log2 ratio) -2
-1
0
1 at 5474.934 kb on - strand, within HSERO_RS23885 at 5475.089 kb on + strand, within HSERO_RS23885 at 5475.159 kb on - strand, within HSERO_RS23885 at 5475.169 kb on - strand, within HSERO_RS23885 at 5475.268 kb on + strand, within HSERO_RS23885 at 5475.315 kb on + strand, within HSERO_RS23885 at 5475.464 kb on + strand, within HSERO_RS23885 at 5475.530 kb on - strand, within HSERO_RS23885 at 5475.537 kb on + strand, within HSERO_RS23885 at 5475.545 kb on - strand, within HSERO_RS23885 at 5476.287 kb on + strand at 5476.337 kb on + strand at 5476.461 kb on + strand, within HSERO_RS23895 at 5476.471 kb on + strand, within HSERO_RS23895 at 5476.499 kb on + strand, within HSERO_RS23895 at 5476.594 kb on - strand, within HSERO_RS23895 at 5476.700 kb on - strand, within HSERO_RS23895 at 5476.745 kb on + strand, within HSERO_RS23895 at 5477.105 kb on + strand, within HSERO_RS23900
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 5,474,934 - HSERO_RS23885 0.11 +1.5 5,475,089 + HSERO_RS23885 0.28 -1.2 5,475,159 - HSERO_RS23885 0.35 -0.4 5,475,169 - HSERO_RS23885 0.36 +0.4 5,475,268 + HSERO_RS23885 0.47 +1.0 5,475,315 + HSERO_RS23885 0.52 -0.8 5,475,464 + HSERO_RS23885 0.69 -0.3 5,475,530 - HSERO_RS23885 0.76 +0.7 5,475,537 + HSERO_RS23885 0.76 +0.6 5,475,545 - HSERO_RS23885 0.77 +0.6 5,476,287 + +0.5 5,476,337 + -0.6 5,476,461 + HSERO_RS23895 0.11 -0.4 5,476,471 + HSERO_RS23895 0.13 -1.7 5,476,499 + HSERO_RS23895 0.18 -2.2 5,476,594 - HSERO_RS23895 0.34 -2.7 5,476,700 - HSERO_RS23895 0.53 +0.2 5,476,745 + HSERO_RS23895 0.60 -0.7 5,477,105 + HSERO_RS23900 0.21 -0.6
Or see this region's nucleotide sequence