Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23870 and HSERO_RS23875 are separated by 40 nucleotides HSERO_RS23875 and HSERO_RS23880 are separated by 35 nucleotides HSERO_RS23880 and HSERO_RS23885 are separated by 217 nucleotides
HSERO_RS23870: HSERO_RS23870 - lipoyl synthase, at 5,472,498 to 5,473,490
_RS23870
HSERO_RS23875: HSERO_RS23875 - lipoate-protein ligase B, at 5,473,531 to 5,474,223
_RS23875
HSERO_RS23880: HSERO_RS23880 - hypothetical protein, at 5,474,259 to 5,474,615
_RS23880
HSERO_RS23885: HSERO_RS23885 - XRE family transcriptional regulator, at 5,474,833 to 5,475,753
_RS23885
Position (kb) 5473
5474
5475 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5474.494 kb on + strand, within HSERO_RS23880 at 5474.512 kb on + strand, within HSERO_RS23880 at 5474.515 kb on - strand, within HSERO_RS23880 at 5474.520 kb on - strand, within HSERO_RS23880 at 5474.525 kb on - strand, within HSERO_RS23880 at 5474.530 kb on - strand, within HSERO_RS23880 at 5474.538 kb on + strand, within HSERO_RS23880 at 5474.541 kb on - strand, within HSERO_RS23880 at 5474.592 kb on + strand at 5474.593 kb on - strand at 5474.659 kb on + strand at 5474.673 kb on + strand at 5474.681 kb on - strand at 5474.767 kb on - strand at 5474.837 kb on - strand at 5474.934 kb on - strand, within HSERO_RS23885 at 5475.089 kb on + strand, within HSERO_RS23885 at 5475.159 kb on - strand, within HSERO_RS23885 at 5475.169 kb on - strand, within HSERO_RS23885
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 5,474,494 + HSERO_RS23880 0.66 +1.1 5,474,512 + HSERO_RS23880 0.71 +0.4 5,474,515 - HSERO_RS23880 0.72 -0.9 5,474,520 - HSERO_RS23880 0.73 -0.7 5,474,525 - HSERO_RS23880 0.75 -0.3 5,474,530 - HSERO_RS23880 0.76 +0.1 5,474,538 + HSERO_RS23880 0.78 -3.1 5,474,541 - HSERO_RS23880 0.79 +0.8 5,474,592 + -0.6 5,474,593 - +0.9 5,474,659 + -0.4 5,474,673 + +1.2 5,474,681 - +0.8 5,474,767 - -2.1 5,474,837 - -0.2 5,474,934 - HSERO_RS23885 0.11 +1.5 5,475,089 + HSERO_RS23885 0.28 -1.2 5,475,159 - HSERO_RS23885 0.35 -0.4 5,475,169 - HSERO_RS23885 0.36 +0.4
Or see this region's nucleotide sequence