Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22910 and HSERO_RS22915 are separated by 300 nucleotides HSERO_RS22915 and HSERO_RS22920 are separated by 24 nucleotides HSERO_RS22920 and HSERO_RS22925 are separated by 185 nucleotides
HSERO_RS22910: HSERO_RS22910 - benzaldehyde dehydrogenase, at 5,256,017 to 5,257,480
_RS22910
HSERO_RS22915: HSERO_RS22915 - Fis family transcriptional regulator, at 5,257,781 to 5,259,616
_RS22915
HSERO_RS22920: HSERO_RS22920 - hypothetical protein, at 5,259,641 to 5,259,928
_RS22920
HSERO_RS22925: HSERO_RS22925 - MFS transporter, at 5,260,114 to 5,261,550
_RS22925
Position (kb) 5257
5258
5259
5260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5256.826 kb on + strand, within HSERO_RS22910 at 5256.937 kb on + strand, within HSERO_RS22910 at 5256.942 kb on + strand, within HSERO_RS22910 at 5256.950 kb on - strand, within HSERO_RS22910 at 5257.139 kb on + strand, within HSERO_RS22910 at 5257.164 kb on - strand, within HSERO_RS22910 at 5257.167 kb on + strand, within HSERO_RS22910 at 5257.175 kb on - strand, within HSERO_RS22910 at 5257.183 kb on - strand, within HSERO_RS22910 at 5257.358 kb on - strand at 5257.403 kb on - strand at 5257.491 kb on + strand at 5258.161 kb on + strand, within HSERO_RS22915 at 5258.169 kb on - strand, within HSERO_RS22915 at 5258.341 kb on - strand, within HSERO_RS22915 at 5258.387 kb on + strand, within HSERO_RS22915 at 5258.459 kb on + strand, within HSERO_RS22915 at 5258.472 kb on - strand, within HSERO_RS22915 at 5258.560 kb on + strand, within HSERO_RS22915 at 5258.732 kb on + strand, within HSERO_RS22915 at 5258.941 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.168 kb on + strand, within HSERO_RS22915 at 5259.176 kb on - strand, within HSERO_RS22915 at 5259.318 kb on + strand, within HSERO_RS22915 at 5259.449 kb on + strand at 5259.834 kb on + strand, within HSERO_RS22920 at 5259.878 kb on + strand, within HSERO_RS22920 at 5259.891 kb on - strand, within HSERO_RS22920 at 5259.979 kb on + strand at 5260.223 kb on + strand at 5260.263 kb on + strand, within HSERO_RS22925 at 5260.344 kb on - strand, within HSERO_RS22925 at 5260.455 kb on + strand, within HSERO_RS22925 at 5260.478 kb on - strand, within HSERO_RS22925 at 5260.481 kb on + strand, within HSERO_RS22925 at 5260.481 kb on + strand, within HSERO_RS22925 at 5260.537 kb on - strand, within HSERO_RS22925
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 5,256,826 + HSERO_RS22910 0.55 -2.1 5,256,937 + HSERO_RS22910 0.63 -1.0 5,256,942 + HSERO_RS22910 0.63 -1.7 5,256,950 - HSERO_RS22910 0.64 +1.3 5,257,139 + HSERO_RS22910 0.77 -0.0 5,257,164 - HSERO_RS22910 0.78 +0.3 5,257,167 + HSERO_RS22910 0.79 -0.5 5,257,175 - HSERO_RS22910 0.79 -0.0 5,257,183 - HSERO_RS22910 0.80 -0.5 5,257,358 - -1.5 5,257,403 - -0.1 5,257,491 + +1.1 5,258,161 + HSERO_RS22915 0.21 -0.0 5,258,169 - HSERO_RS22915 0.21 +1.4 5,258,341 - HSERO_RS22915 0.31 -1.3 5,258,387 + HSERO_RS22915 0.33 -0.0 5,258,459 + HSERO_RS22915 0.37 -0.0 5,258,472 - HSERO_RS22915 0.38 -0.6 5,258,560 + HSERO_RS22915 0.42 +0.8 5,258,732 + HSERO_RS22915 0.52 -1.1 5,258,941 + HSERO_RS22915 0.63 -0.2 5,259,168 + HSERO_RS22915 0.76 +0.1 5,259,168 + HSERO_RS22915 0.76 -2.6 5,259,168 + HSERO_RS22915 0.76 -3.3 5,259,176 - HSERO_RS22915 0.76 -0.5 5,259,318 + HSERO_RS22915 0.84 -0.0 5,259,449 + -1.8 5,259,834 + HSERO_RS22920 0.67 -2.2 5,259,878 + HSERO_RS22920 0.82 +1.8 5,259,891 - HSERO_RS22920 0.87 +2.4 5,259,979 + +0.1 5,260,223 + +0.1 5,260,263 + HSERO_RS22925 0.10 +0.5 5,260,344 - HSERO_RS22925 0.16 -1.9 5,260,455 + HSERO_RS22925 0.24 -1.9 5,260,478 - HSERO_RS22925 0.25 -0.1 5,260,481 + HSERO_RS22925 0.26 -0.4 5,260,481 + HSERO_RS22925 0.26 +0.1 5,260,537 - HSERO_RS22925 0.29 -1.7
Or see this region's nucleotide sequence