Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22385 and HSERO_RS22390 are separated by 58 nucleotides HSERO_RS22390 and HSERO_RS22395 are separated by 174 nucleotides HSERO_RS22395 and HSERO_RS22400 overlap by 4 nucleotides
HSERO_RS22385: HSERO_RS22385 - GMC family oxidoreductase, at 5,122,442 to 5,124,223
_RS22385
HSERO_RS22390: HSERO_RS22390 - alcohol dehydrogenase, at 5,124,282 to 5,125,682
_RS22390
HSERO_RS22395: HSERO_RS22395 - RNA polymerase sigma factor, at 5,125,857 to 5,126,366
_RS22395
HSERO_RS22400: HSERO_RS22400 - Fe2+-dicitrate sensor membrane protein, at 5,126,363 to 5,127,343
_RS22400
Position (kb) 5124
5125
5126 Strain fitness (log2 ratio) -2
-1
0
1 at 5123.660 kb on - strand, within HSERO_RS22385 at 5123.709 kb on + strand, within HSERO_RS22385 at 5123.759 kb on - strand, within HSERO_RS22385 at 5123.951 kb on + strand, within HSERO_RS22385 at 5123.951 kb on + strand, within HSERO_RS22385 at 5124.104 kb on - strand at 5124.157 kb on - strand at 5124.225 kb on - strand at 5124.369 kb on - strand at 5124.455 kb on - strand, within HSERO_RS22390 at 5124.490 kb on + strand, within HSERO_RS22390 at 5124.567 kb on + strand, within HSERO_RS22390 at 5124.586 kb on + strand, within HSERO_RS22390 at 5124.948 kb on + strand, within HSERO_RS22390 at 5124.949 kb on + strand, within HSERO_RS22390 at 5124.957 kb on - strand, within HSERO_RS22390 at 5125.135 kb on - strand, within HSERO_RS22390 at 5125.154 kb on + strand, within HSERO_RS22390 at 5125.155 kb on + strand, within HSERO_RS22390 at 5125.214 kb on + strand, within HSERO_RS22390 at 5125.503 kb on - strand, within HSERO_RS22390 at 5125.545 kb on - strand at 5125.564 kb on + strand at 5125.579 kb on + strand at 5125.587 kb on - strand at 5125.615 kb on + strand at 5125.615 kb on + strand at 5125.839 kb on + strand at 5125.847 kb on - strand at 5125.929 kb on + strand, within HSERO_RS22395 at 5125.960 kb on + strand, within HSERO_RS22395 at 5126.063 kb on + strand, within HSERO_RS22395 at 5126.271 kb on + strand, within HSERO_RS22395 at 5126.307 kb on - strand, within HSERO_RS22395 at 5126.339 kb on - strand at 5126.365 kb on + strand at 5126.521 kb on + strand at 5126.521 kb on + strand, within HSERO_RS22400 at 5126.608 kb on + strand, within HSERO_RS22400 at 5126.631 kb on + strand, within HSERO_RS22400 at 5126.637 kb on - strand, within HSERO_RS22400
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 5,123,660 - HSERO_RS22385 0.68 +0.1 5,123,709 + HSERO_RS22385 0.71 +0.4 5,123,759 - HSERO_RS22385 0.74 -0.7 5,123,951 + HSERO_RS22385 0.85 -0.8 5,123,951 + HSERO_RS22385 0.85 -0.5 5,124,104 - -1.5 5,124,157 - +0.3 5,124,225 - +1.5 5,124,369 - -1.3 5,124,455 - HSERO_RS22390 0.12 -0.1 5,124,490 + HSERO_RS22390 0.15 -0.8 5,124,567 + HSERO_RS22390 0.20 -0.2 5,124,586 + HSERO_RS22390 0.22 -0.4 5,124,948 + HSERO_RS22390 0.48 +0.3 5,124,949 + HSERO_RS22390 0.48 -0.4 5,124,957 - HSERO_RS22390 0.48 -0.4 5,125,135 - HSERO_RS22390 0.61 +0.3 5,125,154 + HSERO_RS22390 0.62 -0.4 5,125,155 + HSERO_RS22390 0.62 -1.5 5,125,214 + HSERO_RS22390 0.67 -1.1 5,125,503 - HSERO_RS22390 0.87 -0.7 5,125,545 - -2.2 5,125,564 + +0.1 5,125,579 + -1.3 5,125,587 - -0.1 5,125,615 + +0.6 5,125,615 + +0.2 5,125,839 + -0.9 5,125,847 - +0.2 5,125,929 + HSERO_RS22395 0.14 +0.2 5,125,960 + HSERO_RS22395 0.20 -0.8 5,126,063 + HSERO_RS22395 0.40 +0.2 5,126,271 + HSERO_RS22395 0.81 -2.2 5,126,307 - HSERO_RS22395 0.88 -1.2 5,126,339 - -2.2 5,126,365 + +0.8 5,126,521 + -0.5 5,126,521 + HSERO_RS22400 0.16 -1.1 5,126,608 + HSERO_RS22400 0.25 -0.9 5,126,631 + HSERO_RS22400 0.27 -2.7 5,126,637 - HSERO_RS22400 0.28 -0.3
Or see this region's nucleotide sequence