Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20195 and HSERO_RS20200 overlap by 4 nucleotides HSERO_RS20200 and HSERO_RS20205 are separated by 295 nucleotides
HSERO_RS20195: HSERO_RS20195 - type VI secretion protein, at 4,636,735 to 4,638,081
_RS20195
HSERO_RS20200: HSERO_RS20200 - type VI secretion system protein ImpK, at 4,638,078 to 4,638,857
_RS20200
HSERO_RS20205: HSERO_RS20205 - membrane protein, at 4,639,153 to 4,640,658
_RS20205
Position (kb) 4638
4639 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4637.211 kb on - strand, within HSERO_RS20195 at 4637.230 kb on - strand, within HSERO_RS20195 at 4637.258 kb on + strand, within HSERO_RS20195 at 4637.259 kb on + strand, within HSERO_RS20195 at 4637.267 kb on - strand, within HSERO_RS20195 at 4637.351 kb on + strand, within HSERO_RS20195 at 4637.386 kb on + strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.394 kb on - strand, within HSERO_RS20195 at 4637.471 kb on - strand, within HSERO_RS20195 at 4637.505 kb on + strand, within HSERO_RS20195 at 4637.593 kb on - strand, within HSERO_RS20195 at 4637.726 kb on - strand, within HSERO_RS20195 at 4637.763 kb on - strand, within HSERO_RS20195 at 4637.900 kb on - strand, within HSERO_RS20195 at 4638.031 kb on - strand at 4638.206 kb on - strand, within HSERO_RS20200 at 4638.276 kb on + strand at 4638.296 kb on + strand, within HSERO_RS20200 at 4638.428 kb on - strand, within HSERO_RS20200 at 4638.437 kb on + strand, within HSERO_RS20200 at 4638.691 kb on - strand, within HSERO_RS20200 at 4638.745 kb on + strand, within HSERO_RS20200 at 4638.765 kb on - strand, within HSERO_RS20200 at 4638.846 kb on + strand at 4638.854 kb on - strand at 4638.854 kb on - strand at 4638.854 kb on - strand at 4638.854 kb on - strand at 4638.859 kb on - strand at 4638.859 kb on - strand at 4639.184 kb on + strand at 4639.184 kb on + strand at 4639.218 kb on + strand at 4639.300 kb on - strand at 4639.352 kb on - strand, within HSERO_RS20205 at 4639.353 kb on + strand, within HSERO_RS20205 at 4639.387 kb on - strand, within HSERO_RS20205 at 4639.387 kb on - strand, within HSERO_RS20205 at 4639.443 kb on + strand, within HSERO_RS20205 at 4639.443 kb on + strand, within HSERO_RS20205 at 4639.477 kb on + strand, within HSERO_RS20205 at 4639.649 kb on - strand, within HSERO_RS20205 at 4639.649 kb on - strand, within HSERO_RS20205 at 4639.699 kb on + strand, within HSERO_RS20205 at 4639.738 kb on - strand, within HSERO_RS20205 at 4639.787 kb on + strand, within HSERO_RS20205
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 4,637,211 - HSERO_RS20195 0.35 +0.3 4,637,230 - HSERO_RS20195 0.37 -0.1 4,637,258 + HSERO_RS20195 0.39 -0.8 4,637,259 + HSERO_RS20195 0.39 +1.4 4,637,267 - HSERO_RS20195 0.39 +0.1 4,637,351 + HSERO_RS20195 0.46 -3.2 4,637,386 + HSERO_RS20195 0.48 +0.3 4,637,394 - HSERO_RS20195 0.49 +0.4 4,637,394 - HSERO_RS20195 0.49 -0.7 4,637,394 - HSERO_RS20195 0.49 +0.1 4,637,394 - HSERO_RS20195 0.49 +0.5 4,637,394 - HSERO_RS20195 0.49 +0.0 4,637,471 - HSERO_RS20195 0.55 -0.3 4,637,505 + HSERO_RS20195 0.57 -0.7 4,637,593 - HSERO_RS20195 0.64 +0.7 4,637,726 - HSERO_RS20195 0.74 -0.4 4,637,763 - HSERO_RS20195 0.76 -0.4 4,637,900 - HSERO_RS20195 0.86 -1.3 4,638,031 - -1.3 4,638,206 - HSERO_RS20200 0.16 -0.4 4,638,276 + +1.4 4,638,296 + HSERO_RS20200 0.28 -0.9 4,638,428 - HSERO_RS20200 0.45 +1.2 4,638,437 + HSERO_RS20200 0.46 +0.9 4,638,691 - HSERO_RS20200 0.79 +1.7 4,638,745 + HSERO_RS20200 0.86 +1.2 4,638,765 - HSERO_RS20200 0.88 +0.1 4,638,846 + -2.8 4,638,854 - -0.2 4,638,854 - -0.8 4,638,854 - +0.3 4,638,854 - -1.5 4,638,859 - +0.0 4,638,859 - +0.7 4,639,184 + -1.2 4,639,184 + -0.3 4,639,218 + -0.3 4,639,300 - +0.1 4,639,352 - HSERO_RS20205 0.13 -0.2 4,639,353 + HSERO_RS20205 0.13 +0.4 4,639,387 - HSERO_RS20205 0.16 -1.3 4,639,387 - HSERO_RS20205 0.16 -0.2 4,639,443 + HSERO_RS20205 0.19 -0.3 4,639,443 + HSERO_RS20205 0.19 +1.1 4,639,477 + HSERO_RS20205 0.22 -0.3 4,639,649 - HSERO_RS20205 0.33 -0.2 4,639,649 - HSERO_RS20205 0.33 -1.7 4,639,699 + HSERO_RS20205 0.36 +0.1 4,639,738 - HSERO_RS20205 0.39 -3.0 4,639,787 + HSERO_RS20205 0.42 +0.4
Or see this region's nucleotide sequence