Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20075 and HSERO_RS20080 are separated by 41 nucleotides HSERO_RS20080 and HSERO_RS20085 are separated by 259 nucleotides HSERO_RS20085 and HSERO_RS20090 are separated by 33 nucleotides HSERO_RS20090 and HSERO_RS20095 are separated by 30 nucleotides
HSERO_RS20070: HSERO_RS20070 - acyl-CoA dehydrogenase, at 4,605,272 to 4,607,047
_RS20070
HSERO_RS20075: HSERO_RS20075 - MarR family transcriptional regulator, at 4,607,025 to 4,607,510
_RS20075
HSERO_RS20080: HSERO_RS20080 - hypothetical protein, at 4,607,552 to 4,607,785
_RS20080
HSERO_RS20085: HSERO_RS20085 - methyl-accepting chemotaxis protein, at 4,608,045 to 4,609,568
_RS20085
HSERO_RS20090: HSERO_RS20090 - gluconolactonase, at 4,609,602 to 4,610,519
_RS20090
HSERO_RS20095: HSERO_RS20095 - ABC transporter permease, at 4,610,550 to 4,611,500
_RS20095
Position (kb) 4608
4609
4610 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4607.531 kb on - strand at 4607.564 kb on + strand at 4607.574 kb on + strand at 4607.602 kb on + strand, within HSERO_RS20080 at 4607.635 kb on + strand, within HSERO_RS20080 at 4607.911 kb on - strand at 4607.940 kb on + strand at 4608.097 kb on + strand at 4608.121 kb on + strand at 4608.193 kb on - strand at 4608.583 kb on - strand, within HSERO_RS20085 at 4608.623 kb on - strand, within HSERO_RS20085 at 4608.734 kb on + strand, within HSERO_RS20085 at 4608.768 kb on - strand, within HSERO_RS20085 at 4608.885 kb on + strand, within HSERO_RS20085 at 4608.888 kb on - strand, within HSERO_RS20085 at 4608.991 kb on - strand, within HSERO_RS20085 at 4609.013 kb on - strand, within HSERO_RS20085 at 4609.050 kb on + strand, within HSERO_RS20085 at 4609.126 kb on - strand, within HSERO_RS20085 at 4609.253 kb on - strand, within HSERO_RS20085 at 4609.356 kb on - strand, within HSERO_RS20085 at 4609.581 kb on - strand at 4609.595 kb on + strand at 4609.629 kb on - strand at 4609.746 kb on + strand, within HSERO_RS20090 at 4609.783 kb on + strand, within HSERO_RS20090 at 4609.850 kb on - strand, within HSERO_RS20090 at 4610.223 kb on + strand, within HSERO_RS20090 at 4610.272 kb on - strand, within HSERO_RS20090 at 4610.341 kb on - strand at 4610.431 kb on + strand at 4610.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 4,607,531 - +0.5 4,607,564 + +0.3 4,607,574 + -1.5 4,607,602 + HSERO_RS20080 0.21 -1.2 4,607,635 + HSERO_RS20080 0.35 +0.4 4,607,911 - +0.0 4,607,940 + -2.0 4,608,097 + -0.1 4,608,121 + -0.9 4,608,193 - -2.2 4,608,583 - HSERO_RS20085 0.35 -0.7 4,608,623 - HSERO_RS20085 0.38 -1.5 4,608,734 + HSERO_RS20085 0.45 -0.0 4,608,768 - HSERO_RS20085 0.47 -2.2 4,608,885 + HSERO_RS20085 0.55 -1.1 4,608,888 - HSERO_RS20085 0.55 -1.7 4,608,991 - HSERO_RS20085 0.62 -0.1 4,609,013 - HSERO_RS20085 0.64 +0.3 4,609,050 + HSERO_RS20085 0.66 +0.0 4,609,126 - HSERO_RS20085 0.71 +0.5 4,609,253 - HSERO_RS20085 0.79 -0.6 4,609,356 - HSERO_RS20085 0.86 -0.8 4,609,581 - +0.6 4,609,595 + -0.1 4,609,629 - +3.1 4,609,746 + HSERO_RS20090 0.16 -1.2 4,609,783 + HSERO_RS20090 0.20 +1.2 4,609,850 - HSERO_RS20090 0.27 -0.8 4,610,223 + HSERO_RS20090 0.68 +1.1 4,610,272 - HSERO_RS20090 0.73 -1.9 4,610,341 - +1.7 4,610,431 + -0.9 4,610,511 - -1.0
Or see this region's nucleotide sequence