Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20055 and HSERO_RS20060 overlap by 4 nucleotides HSERO_RS20060 and HSERO_RS20065 are separated by 58 nucleotides HSERO_RS20065 and HSERO_RS20070 are separated by 13 nucleotides
HSERO_RS20055: HSERO_RS20055 - metal-dependent hydrolase, at 4,602,103 to 4,603,896
_RS20055
HSERO_RS20060: HSERO_RS20060 - metal-dependent hydrolase, at 4,603,893 to 4,604,648
_RS20060
HSERO_RS20065: HSERO_RS20065 - hypothetical protein, at 4,604,707 to 4,605,258
_RS20065
HSERO_RS20070: HSERO_RS20070 - acyl-CoA dehydrogenase, at 4,605,272 to 4,607,047
_RS20070
Position (kb) 4604
4605
4606 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4603.843 kb on - strand at 4603.875 kb on - strand at 4604.031 kb on - strand, within HSERO_RS20060 at 4604.073 kb on - strand, within HSERO_RS20060 at 4604.162 kb on + strand, within HSERO_RS20060 at 4604.165 kb on - strand, within HSERO_RS20060 at 4604.196 kb on - strand, within HSERO_RS20060 at 4604.300 kb on + strand, within HSERO_RS20060 at 4604.370 kb on - strand, within HSERO_RS20060 at 4604.454 kb on + strand, within HSERO_RS20060 at 4604.547 kb on - strand, within HSERO_RS20060 at 4604.552 kb on + strand, within HSERO_RS20060 at 4604.567 kb on + strand, within HSERO_RS20060 at 4604.567 kb on + strand, within HSERO_RS20060 at 4604.589 kb on + strand at 4604.599 kb on + strand at 4604.995 kb on - strand, within HSERO_RS20065 at 4605.131 kb on + strand, within HSERO_RS20065 at 4605.150 kb on + strand, within HSERO_RS20065 at 4605.150 kb on + strand, within HSERO_RS20065 at 4605.158 kb on - strand, within HSERO_RS20065 at 4605.196 kb on + strand, within HSERO_RS20065 at 4605.276 kb on - strand at 4605.450 kb on + strand, within HSERO_RS20070 at 4605.491 kb on + strand, within HSERO_RS20070 at 4605.551 kb on + strand, within HSERO_RS20070 at 4605.551 kb on + strand, within HSERO_RS20070 at 4605.554 kb on - strand, within HSERO_RS20070 at 4605.559 kb on - strand, within HSERO_RS20070 at 4605.559 kb on - strand, within HSERO_RS20070 at 4605.559 kb on - strand, within HSERO_RS20070 at 4605.596 kb on + strand, within HSERO_RS20070 at 4605.627 kb on + strand, within HSERO_RS20070 at 4605.674 kb on + strand, within HSERO_RS20070 at 4605.767 kb on - strand, within HSERO_RS20070 at 4606.042 kb on + strand, within HSERO_RS20070 at 4606.081 kb on + strand, within HSERO_RS20070 at 4606.158 kb on - strand, within HSERO_RS20070 at 4606.185 kb on - strand, within HSERO_RS20070
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 4,603,843 - +0.6 4,603,875 - +0.3 4,604,031 - HSERO_RS20060 0.18 +0.1 4,604,073 - HSERO_RS20060 0.24 -0.4 4,604,162 + HSERO_RS20060 0.36 -0.1 4,604,165 - HSERO_RS20060 0.36 +0.0 4,604,196 - HSERO_RS20060 0.40 -0.5 4,604,300 + HSERO_RS20060 0.54 -2.5 4,604,370 - HSERO_RS20060 0.63 +0.0 4,604,454 + HSERO_RS20060 0.74 -2.7 4,604,547 - HSERO_RS20060 0.87 -0.7 4,604,552 + HSERO_RS20060 0.87 +0.0 4,604,567 + HSERO_RS20060 0.89 -0.6 4,604,567 + HSERO_RS20060 0.89 -0.1 4,604,589 + -1.3 4,604,599 + +1.2 4,604,995 - HSERO_RS20065 0.52 -1.2 4,605,131 + HSERO_RS20065 0.77 -0.7 4,605,150 + HSERO_RS20065 0.80 -0.4 4,605,150 + HSERO_RS20065 0.80 +2.3 4,605,158 - HSERO_RS20065 0.82 +0.9 4,605,196 + HSERO_RS20065 0.89 +0.1 4,605,276 - -0.1 4,605,450 + HSERO_RS20070 0.10 -0.2 4,605,491 + HSERO_RS20070 0.12 +0.1 4,605,551 + HSERO_RS20070 0.16 +0.6 4,605,551 + HSERO_RS20070 0.16 -2.4 4,605,554 - HSERO_RS20070 0.16 +0.4 4,605,559 - HSERO_RS20070 0.16 +0.6 4,605,559 - HSERO_RS20070 0.16 +0.1 4,605,559 - HSERO_RS20070 0.16 +1.3 4,605,596 + HSERO_RS20070 0.18 -0.2 4,605,627 + HSERO_RS20070 0.20 +0.5 4,605,674 + HSERO_RS20070 0.23 -3.4 4,605,767 - HSERO_RS20070 0.28 +0.2 4,606,042 + HSERO_RS20070 0.43 -0.5 4,606,081 + HSERO_RS20070 0.46 -0.2 4,606,158 - HSERO_RS20070 0.50 +0.2 4,606,185 - HSERO_RS20070 0.51 -2.4
Or see this region's nucleotide sequence