Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02730 and HSERO_RS02735 are separated by 2 nucleotides HSERO_RS02735 and HSERO_RS02740 are separated by 56 nucleotides HSERO_RS02740 and HSERO_RS02745 are separated by 112 nucleotides
HSERO_RS02730: HSERO_RS02730 - histidine kinase, at 605,266 to 607,218
_RS02730
HSERO_RS02735: HSERO_RS02735 - hypothetical protein, at 607,221 to 607,580
_RS02735
HSERO_RS02740: HSERO_RS02740 - hypothetical protein, at 607,637 to 608,149
_RS02740
HSERO_RS02745: HSERO_RS02745 - Mn-containing catalase, at 608,262 to 609,164
_RS02745
Position (kb) 607
608 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 606.278 kb on - strand, within HSERO_RS02730 at 606.356 kb on - strand, within HSERO_RS02730 at 606.383 kb on + strand, within HSERO_RS02730 at 606.393 kb on + strand, within HSERO_RS02730 at 606.474 kb on + strand, within HSERO_RS02730 at 606.577 kb on + strand, within HSERO_RS02730 at 606.605 kb on - strand at 606.740 kb on + strand, within HSERO_RS02730 at 606.924 kb on - strand, within HSERO_RS02730 at 606.949 kb on + strand, within HSERO_RS02730 at 607.049 kb on - strand at 607.054 kb on + strand at 607.076 kb on + strand at 607.092 kb on + strand at 607.142 kb on - strand at 607.490 kb on + strand, within HSERO_RS02735 at 607.534 kb on - strand, within HSERO_RS02735 at 607.681 kb on - strand at 607.721 kb on + strand, within HSERO_RS02740 at 607.736 kb on - strand, within HSERO_RS02740 at 607.817 kb on - strand, within HSERO_RS02740 at 607.865 kb on - strand, within HSERO_RS02740 at 607.889 kb on - strand, within HSERO_RS02740 at 607.908 kb on - strand, within HSERO_RS02740 at 607.978 kb on - strand, within HSERO_RS02740 at 608.008 kb on + strand, within HSERO_RS02740 at 608.032 kb on + strand, within HSERO_RS02740 at 608.097 kb on + strand, within HSERO_RS02740 at 608.114 kb on - strand at 608.259 kb on - strand at 608.312 kb on - strand at 608.327 kb on - strand at 608.334 kb on + strand at 608.399 kb on - strand, within HSERO_RS02745 at 608.401 kb on + strand, within HSERO_RS02745 at 608.401 kb on + strand, within HSERO_RS02745 at 608.404 kb on - strand, within HSERO_RS02745 at 608.409 kb on - strand, within HSERO_RS02745
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 606,278 - HSERO_RS02730 0.52 -0.4 606,356 - HSERO_RS02730 0.56 +1.1 606,383 + HSERO_RS02730 0.57 +0.3 606,393 + HSERO_RS02730 0.58 +0.5 606,474 + HSERO_RS02730 0.62 +1.2 606,577 + HSERO_RS02730 0.67 +0.4 606,605 - +2.1 606,740 + HSERO_RS02730 0.75 +1.8 606,924 - HSERO_RS02730 0.85 -1.3 606,949 + HSERO_RS02730 0.86 +1.4 607,049 - -0.5 607,054 + +1.3 607,076 + -0.3 607,092 + -4.0 607,142 - +0.0 607,490 + HSERO_RS02735 0.75 -0.9 607,534 - HSERO_RS02735 0.87 -0.2 607,681 - -0.8 607,721 + HSERO_RS02740 0.16 -0.6 607,736 - HSERO_RS02740 0.19 +0.1 607,817 - HSERO_RS02740 0.35 +0.3 607,865 - HSERO_RS02740 0.44 +0.1 607,889 - HSERO_RS02740 0.49 +0.5 607,908 - HSERO_RS02740 0.53 -0.0 607,978 - HSERO_RS02740 0.66 -0.3 608,008 + HSERO_RS02740 0.72 -0.3 608,032 + HSERO_RS02740 0.77 -0.3 608,097 + HSERO_RS02740 0.90 +2.4 608,114 - +0.6 608,259 - -0.8 608,312 - -0.1 608,327 - +0.0 608,334 + +2.0 608,399 - HSERO_RS02745 0.15 +1.2 608,401 + HSERO_RS02745 0.15 +0.9 608,401 + HSERO_RS02745 0.15 -0.2 608,404 - HSERO_RS02745 0.16 +0.5 608,409 - HSERO_RS02745 0.16 -0.1
Or see this region's nucleotide sequence