Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02020 and HSERO_RS02025 are separated by 12 nucleotides HSERO_RS02025 and HSERO_RS02030 are separated by 86 nucleotides HSERO_RS02030 and HSERO_RS02035 are separated by 9 nucleotides HSERO_RS02035 and HSERO_RS02040 are separated by 141 nucleotides
HSERO_RS02020: HSERO_RS02020 - tyrosyl-tRNA synthetase, at 442,540 to 443,790
_RS02020
HSERO_RS02025: HSERO_RS02025 - D-tyrosyl-tRNA(Tyr) deacylase, at 443,803 to 444,276
_RS02025
HSERO_RS02030: HSERO_RS02030 - phospholipid-binding protein, at 444,363 to 445,010
_RS02030
HSERO_RS02035: HSERO_RS02035 - phosphoglycerate mutase, at 445,020 to 445,664
_RS02035
HSERO_RS02040: HSERO_RS02040 - XRE family transcriptional regulator, at 445,806 to 446,075
_RS02040
Position (kb) 444
445
446 Strain fitness (log2 ratio) -1
0
1 at 443.878 kb on + strand, within HSERO_RS02025 at 443.887 kb on - strand, within HSERO_RS02025 at 443.892 kb on + strand, within HSERO_RS02025 at 444.070 kb on + strand, within HSERO_RS02025 at 444.207 kb on + strand, within HSERO_RS02025 at 444.252 kb on + strand at 444.351 kb on - strand at 444.653 kb on + strand, within HSERO_RS02030 at 444.661 kb on - strand, within HSERO_RS02030 at 444.661 kb on - strand, within HSERO_RS02030 at 444.676 kb on - strand, within HSERO_RS02030 at 444.940 kb on + strand, within HSERO_RS02030 at 445.036 kb on - strand at 445.318 kb on + strand, within HSERO_RS02035 at 445.419 kb on + strand, within HSERO_RS02035 at 445.488 kb on + strand, within HSERO_RS02035 at 445.505 kb on + strand, within HSERO_RS02035 at 445.523 kb on - strand, within HSERO_RS02035 at 445.577 kb on + strand, within HSERO_RS02035 at 445.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 443,878 + HSERO_RS02025 0.16 -0.1 443,887 - HSERO_RS02025 0.18 -0.4 443,892 + HSERO_RS02025 0.19 -0.8 444,070 + HSERO_RS02025 0.56 -0.2 444,207 + HSERO_RS02025 0.85 -0.7 444,252 + +0.8 444,351 - -0.0 444,653 + HSERO_RS02030 0.45 +1.4 444,661 - HSERO_RS02030 0.46 +1.1 444,661 - HSERO_RS02030 0.46 +0.4 444,676 - HSERO_RS02030 0.48 +0.1 444,940 + HSERO_RS02030 0.89 +0.8 445,036 - +1.1 445,318 + HSERO_RS02035 0.46 +0.9 445,419 + HSERO_RS02035 0.62 +0.6 445,488 + HSERO_RS02035 0.73 -0.3 445,505 + HSERO_RS02035 0.75 +0.4 445,523 - HSERO_RS02035 0.78 +0.4 445,577 + HSERO_RS02035 0.86 -0.3 445,607 + -1.4
Or see this region's nucleotide sequence