Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01470 and HSERO_RS01475 are separated by 128 nucleotides HSERO_RS01475 and HSERO_RS01480 are separated by 216 nucleotides
HSERO_RS01470: HSERO_RS01470 - LysR family transcriptional regulator, at 316,658 to 317,548
_RS01470
HSERO_RS01475: HSERO_RS01475 - oxidoreductase, at 317,677 to 318,423
_RS01475
HSERO_RS01480: HSERO_RS01480 - heat-shock protein, at 318,640 to 319,896
_RS01480
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.770 kb on + strand, within HSERO_RS01470 at 316.938 kb on + strand, within HSERO_RS01470 at 316.946 kb on - strand, within HSERO_RS01470 at 317.195 kb on - strand, within HSERO_RS01470 at 317.420 kb on - strand, within HSERO_RS01470 at 317.511 kb on + strand at 317.520 kb on + strand at 317.676 kb on - strand at 317.982 kb on + strand, within HSERO_RS01475 at 317.987 kb on + strand, within HSERO_RS01475 at 318.021 kb on + strand, within HSERO_RS01475 at 318.022 kb on - strand, within HSERO_RS01475 at 318.036 kb on + strand, within HSERO_RS01475 at 318.181 kb on - strand, within HSERO_RS01475 at 318.292 kb on + strand, within HSERO_RS01475 at 318.351 kb on - strand at 318.391 kb on + strand at 318.502 kb on + strand at 318.596 kb on + strand at 318.604 kb on - strand at 318.656 kb on - strand at 318.761 kb on - strand at 318.779 kb on + strand, within HSERO_RS01480 at 318.811 kb on - strand, within HSERO_RS01480 at 318.856 kb on + strand, within HSERO_RS01480 at 319.000 kb on - strand, within HSERO_RS01480 at 319.003 kb on + strand, within HSERO_RS01480 at 319.011 kb on - strand, within HSERO_RS01480 at 319.334 kb on - strand, within HSERO_RS01480 at 319.334 kb on - strand, within HSERO_RS01480 at 319.375 kb on + strand, within HSERO_RS01480 at 319.421 kb on + strand, within HSERO_RS01480
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 316,770 + HSERO_RS01470 0.13 -0.6 316,938 + HSERO_RS01470 0.31 +0.0 316,946 - HSERO_RS01470 0.32 -0.8 317,195 - HSERO_RS01470 0.60 -0.1 317,420 - HSERO_RS01470 0.86 +0.1 317,511 + +1.2 317,520 + -0.5 317,676 - -1.9 317,982 + HSERO_RS01475 0.41 -0.6 317,987 + HSERO_RS01475 0.41 +0.1 318,021 + HSERO_RS01475 0.46 -0.8 318,022 - HSERO_RS01475 0.46 +0.4 318,036 + HSERO_RS01475 0.48 +0.7 318,181 - HSERO_RS01475 0.67 +1.0 318,292 + HSERO_RS01475 0.82 -0.5 318,351 - -0.6 318,391 + -0.0 318,502 + -0.4 318,596 + +0.3 318,604 - +0.4 318,656 - -0.9 318,761 - +0.2 318,779 + HSERO_RS01480 0.11 +0.5 318,811 - HSERO_RS01480 0.14 +0.9 318,856 + HSERO_RS01480 0.17 -0.3 319,000 - HSERO_RS01480 0.29 -1.2 319,003 + HSERO_RS01480 0.29 -0.2 319,011 - HSERO_RS01480 0.30 +2.3 319,334 - HSERO_RS01480 0.55 +0.6 319,334 - HSERO_RS01480 0.55 +0.2 319,375 + HSERO_RS01480 0.58 -0.2 319,421 + HSERO_RS01480 0.62 +2.4
Or see this region's nucleotide sequence