Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00320 and PGA1_78p00330 are separated by 37 nucleotides PGA1_78p00330 and PGA1_78p00340 are separated by 81 nucleotides PGA1_78p00340 and PGA1_78p00350 are separated by 56 nucleotides
PGA1_78p00320: PGA1_78p00320 - putative HTH-type transcriptional regulator, at 39,674 to 40,717
_78p00320
PGA1_78p00330: PGA1_78p00330 - putative transcriptional regulator, at 40,755 to 41,387
_78p00330
PGA1_78p00340: PGA1_78p00340 - Uncharacterized protein, possibly involved in utilization of glycolate and propanediol, at 41,469 to 41,960
_78p00340
PGA1_78p00350: PGA1_78p00350 - FAD dependent oxidoreductase, at 42,017 to 43,354
_78p00350
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1 at 41.050 kb on - strand, within PGA1_78p00330 at 41.457 kb on + strand at 41.457 kb on + strand at 41.465 kb on - strand at 41.538 kb on - strand, within PGA1_78p00340 at 41.556 kb on - strand, within PGA1_78p00340 at 41.729 kb on - strand, within PGA1_78p00340 at 41.729 kb on - strand, within PGA1_78p00340 at 41.729 kb on - strand, within PGA1_78p00340 at 41.765 kb on - strand, within PGA1_78p00340 at 42.020 kb on + strand at 42.539 kb on - strand, within PGA1_78p00350 at 42.737 kb on + strand, within PGA1_78p00350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 41,050 - PGA1_78p00330 0.47 +1.2 41,457 + -0.7 41,457 + -0.4 41,465 - -1.9 41,538 - PGA1_78p00340 0.14 +0.4 41,556 - PGA1_78p00340 0.18 -0.2 41,729 - PGA1_78p00340 0.53 -0.7 41,729 - PGA1_78p00340 0.53 +1.4 41,729 - PGA1_78p00340 0.53 +0.8 41,765 - PGA1_78p00340 0.60 +0.8 42,020 + +1.0 42,539 - PGA1_78p00350 0.39 -0.5 42,737 + PGA1_78p00350 0.54 -1.7
Or see this region's nucleotide sequence