Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00210

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_78p00190 and PGA1_78p00200 are separated by 20 nucleotidesPGA1_78p00200 and PGA1_78p00210 are separated by 9 nucleotidesPGA1_78p00210 and PGA1_78p00220 are separated by 49 nucleotides PGA1_78p00190: PGA1_78p00190 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 22,202 to 23,287 _78p00190 PGA1_78p00200: PGA1_78p00200 - Sugar phosphate isomerases/epimerases, at 23,308 to 24,051 _78p00200 PGA1_78p00210: PGA1_78p00210 - putative oxidoreductase, at 24,061 to 25,194 _78p00210 PGA1_78p00220: PGA1_78p00220 - transcriptional regulatory protein, LysR family, at 25,244 to 26,131 _78p00220 Position (kb) 24 25 26Strain fitness (log2 ratio) -1 0 1at 23.154 kb on - strand, within PGA1_78p00190at 23.781 kb on - strand, within PGA1_78p00200at 23.786 kb on - strand, within PGA1_78p00200at 24.221 kb on + strand, within PGA1_78p00210at 24.532 kb on - strand, within PGA1_78p00210at 24.597 kb on + strand, within PGA1_78p00210at 24.853 kb on - strand, within PGA1_78p00210at 25.032 kb on + strand, within PGA1_78p00210at 25.362 kb on + strand, within PGA1_78p00220at 25.560 kb on - strand, within PGA1_78p00220at 26.110 kb on + strandat 26.118 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
23,154 - PGA1_78p00190 0.88 +0.4
23,781 - PGA1_78p00200 0.64 +0.4
23,786 - PGA1_78p00200 0.64 +0.3
24,221 + PGA1_78p00210 0.14 +1.3
24,532 - PGA1_78p00210 0.42 -0.7
24,597 + PGA1_78p00210 0.47 +1.4
24,853 - PGA1_78p00210 0.70 +0.7
25,032 + PGA1_78p00210 0.86 +1.6
25,362 + PGA1_78p00220 0.13 -1.4
25,560 - PGA1_78p00220 0.36 +0.8
26,110 + +0.5
26,118 - +0.2

Or see this region's nucleotide sequence