Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01440 and PGA1_262p01450 are separated by 62 nucleotides PGA1_262p01450 and PGA1_262p01460 overlap by 1 nucleotides
PGA1_262p01440: PGA1_262p01440 - BCCT transporter, at 156,478 to 158,022
_262p01440
PGA1_262p01450: PGA1_262p01450 - putative membrane dipeptidase, at 158,085 to 159,077
_262p01450
PGA1_262p01460: PGA1_262p01460 - aldehyde dehydrogenase, at 159,077 to 160,570
_262p01460
Position (kb) 158
159
160 Strain fitness (log2 ratio) -1
0
1 at 157.093 kb on - strand, within PGA1_262p01440 at 157.215 kb on - strand, within PGA1_262p01440 at 157.344 kb on + strand, within PGA1_262p01440 at 157.464 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.535 kb on + strand, within PGA1_262p01440 at 157.762 kb on - strand, within PGA1_262p01440 at 157.831 kb on + strand, within PGA1_262p01440 at 157.928 kb on + strand at 157.928 kb on + strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.987 kb on + strand at 157.997 kb on + strand at 158.055 kb on + strand at 158.055 kb on + strand at 158.088 kb on + strand at 158.215 kb on - strand, within PGA1_262p01450 at 158.345 kb on + strand, within PGA1_262p01450 at 158.525 kb on + strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.555 kb on + strand, within PGA1_262p01450 at 158.607 kb on - strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.895 kb on - strand, within PGA1_262p01450 at 158.945 kb on - strand, within PGA1_262p01450 at 159.095 kb on + strand at 159.117 kb on + strand at 159.143 kb on - strand at 159.154 kb on + strand at 159.154 kb on + strand at 159.156 kb on + strand at 159.546 kb on + strand, within PGA1_262p01460 at 159.566 kb on + strand, within PGA1_262p01460 at 159.604 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.927 kb on - strand, within PGA1_262p01460 at 159.936 kb on + strand, within PGA1_262p01460 at 159.989 kb on - strand, within PGA1_262p01460
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 157,093 - PGA1_262p01440 0.40 -1.6 157,215 - PGA1_262p01440 0.48 +0.1 157,344 + PGA1_262p01440 0.56 +0.3 157,464 + PGA1_262p01440 0.64 +0.5 157,469 + PGA1_262p01440 0.64 +0.6 157,469 + PGA1_262p01440 0.64 +0.4 157,535 + PGA1_262p01440 0.68 +0.0 157,762 - PGA1_262p01440 0.83 +0.4 157,831 + PGA1_262p01440 0.88 +1.1 157,928 + +0.4 157,928 + +0.3 157,936 - -0.3 157,936 - +1.2 157,936 - +0.0 157,936 - -1.1 157,987 + +0.2 157,997 + -0.5 158,055 + -0.2 158,055 + +0.9 158,088 + -0.0 158,215 - PGA1_262p01450 0.13 +0.7 158,345 + PGA1_262p01450 0.26 -0.4 158,525 + PGA1_262p01450 0.44 +0.9 158,533 - PGA1_262p01450 0.45 -0.5 158,533 - PGA1_262p01450 0.45 -0.3 158,555 + PGA1_262p01450 0.47 +0.7 158,607 - PGA1_262p01450 0.53 +0.1 158,786 + PGA1_262p01450 0.71 +1.6 158,786 + PGA1_262p01450 0.71 -0.9 158,895 - PGA1_262p01450 0.82 +0.6 158,945 - PGA1_262p01450 0.87 +0.0 159,095 + +0.7 159,117 + +0.6 159,143 - -0.0 159,154 + +1.2 159,154 + -1.0 159,156 + -0.4 159,546 + PGA1_262p01460 0.31 +0.4 159,566 + PGA1_262p01460 0.33 +0.1 159,604 + PGA1_262p01460 0.35 -0.6 159,871 + PGA1_262p01460 0.53 +0.0 159,871 + PGA1_262p01460 0.53 +0.1 159,871 + PGA1_262p01460 0.53 -0.4 159,927 - PGA1_262p01460 0.57 +0.4 159,936 + PGA1_262p01460 0.57 -0.5 159,989 - PGA1_262p01460 0.61 -0.2
Or see this region's nucleotide sequence